mRNA_S-firma_M_contig9114.20059.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9114.20059.1
Unique NamemRNA_S-firma_M_contig9114.20059.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9114.20059.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 9.630e-79
Identity = 130/158 (82.28%), Postives = 145/158 (91.77%), Query Frame = 3 
Query:  546 RTWGMNSGGGGNQTGNAGWSGAGHAARDFSAEGAGEKYFGLHLKVPADQLSATLQRLVQEDGSL-EPLPPLCDIDVSPGYPGVTKAKGKFGLDEGRVVLRVHNSNRPNVCVSEGAIPVTTRTPPFKVPAWAIGPLRAGMVVIRNQSNAPALQK-NKKN 1013
            R+ G++SGGG NQTG+AGW GAG AARDFSAEGAGEKYFGL LK+PAD+L+ATLQRLV+EDGSL EPLPPLC IDVSPGYPGV KAKG FGLDEGRVVLRVHNSN+PNVCVSEGAIPVTTRTPPFKVPA+AIGP RAG +++RNQ+NA AL+K NKKN
Sbjct:   91 RSTGIDSGGGDNQTGSAGWCGAGRAARDFSAEGAGEKYFGLRLKIPADKLAATLQRLVEEDGSLLEPLPPLCGIDVSPGYPGVIKAKGTFGLDEGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALKKKNKKN 248
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BLAST of mRNA_S-firma_M_contig9114.20059.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.890e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 3 
Query:  771 SPGYPGVTKAKGKFGLDEGRVVLRVHNSNRPNVCVSEGAIPVTTRTPPFKVPAWAIGPLRAGMVVIRNQSNAPALQK-NKKN 1013
            +PGYPGVT+AKGKFGLDEGRVVLRVHNSN+PNVCVSEGAIPVTTRTPPF VPA+AIGPLRAG V+IRNQSNA AL+K NKKN
Sbjct:  218 TPGYPGVTRAKGKFGLDEGRVVLRVHNSNKPNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALKKKNKKN 299
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BLAST of mRNA_S-firma_M_contig9114.20059.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.430e-30
Identity = 78/169 (46.15%), Postives = 99/169 (58.58%), Query Frame = 3 
Query:  531 WSTSGRTW-------GMNSGGGGNQTGNAGWSGAGHAARDFSAEGAGEKYFGLHLKVPADQLSATLQRLVQEDGSLEPLPPLCDIDVSPGYPGVTKAKGKFGLD-EGRVVLRVHNSNRPNVCVSEGAIPVTTRTPPFKVPAWAIGPLRAGMVVIRNQSNAPALQKNKKN 1013
            W  S   W        +NSG G    G    SG G  ARDFSAEGA +K++GLHL +P   L+A L+ LVQ DGSL+  P LCD +V+P +PG+TK +  FGLD EG +++ VHN    N CV  G IPVTT  PP++VP +AI PL AG +V     N     + K N
Sbjct:  367 WDGSAGNWVKAASQKALNSGPGYGAVGKPFNSGNGATARDFSAEGANDKWYGLHLDIPTRDLAAKLRLLVQPDGSLKDAP-LCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLN 534
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BLAST of mRNA_S-firma_M_contig9114.20059.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 8.550e-7
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  603 SGAGHAARDFSAEGAGEKYFGLHLKVPADQLSATLQRLVQEDGSLEPLPPL 755
            SG GHAARDFS EG+GE+Y+GLHL +P   L A L  LVQ DGSL+  PPL
Sbjct:  393 SGDGHAARDFSEEGSGERYYGLHLALPTKDLRAQLPLLVQPDGSLKE-PPL 442
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9114.20059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKS4_ECTSI9.630e-7982.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI61_9PHAE2.890e-3787.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8P5_ECTSI1.430e-3046.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFC5_ECTSI8.550e-764.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9114contigS-firma_M_contig9114:2..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_005350.1
Exons2
Model size1233
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9114.20059.1prot_S-firma_M_contig9114.20059.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9114 946..1404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.9572787-UTR-S-firma_M_contig9114:1..5561622828737.9572787-UTR-S-firma_M_contig9114:1..556Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 2..556 +
1697105132.444078-UTR-S-firma_M_contig9114:1..5561697105132.444078-UTR-S-firma_M_contig9114:1..556Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 2..556 +
1622828737.976234-UTR-S-firma_M_contig9114:943..9451622828737.976234-UTR-S-firma_M_contig9114:943..945Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 944..945 +
1697105132.4559228-UTR-S-firma_M_contig9114:943..9451697105132.4559228-UTR-S-firma_M_contig9114:943..945Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 944..945 +
1622828738.0033522-UTR-S-firma_M_contig9114:1404..16211622828738.0033522-UTR-S-firma_M_contig9114:1404..1621Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 1405..1621 +
1697105132.4857037-UTR-S-firma_M_contig9114:1404..16211697105132.4857037-UTR-S-firma_M_contig9114:1404..1621Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9114 1405..1621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828737.9910538-CDS-S-firma_M_contig9114:945..14041622828737.9910538-CDS-S-firma_M_contig9114:945..1404Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9114 946..1404 +
1697105132.4673617-CDS-S-firma_M_contig9114:945..14041697105132.4673617-CDS-S-firma_M_contig9114:945..1404Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9114 946..1404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9114.20059.1

>prot_S-firma_M_contig9114.20059.1 ID=prot_S-firma_M_contig9114.20059.1|Name=mRNA_S-firma_M_contig9114.20059.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=153bp
MNSGGGGNQTGNAGWSGAGHAARDFSAEGAGEKYFGLHLKVPADQLSATL
QRLVQEDGSLEPLPPLCDIDVSPGYPGVTKAKGKFGLDEGRVVLRVHNSN
RPNVCVSEGAIPVTTRTPPFKVPAWAIGPLRAGMVVIRNQSNAPALQKNK
KN*
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mRNA from alignment at S-firma_M_contig9114:2..1621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9114.20059.1 ID=mRNA_S-firma_M_contig9114.20059.1|Name=mRNA_S-firma_M_contig9114.20059.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at S-firma_M_contig9114:2..1621+ (Sphaerotrichia firma Sfir_13m male)
ACTGTTTCTGTTTCCTGGCAGACGGAGGAGAAAGCTTCCCGTCAGTGTGT
GTTGTAACATCATCTACACACAACCTAGTGGCCCGCCTGTGCGCCTCCCC
CCCTCCCTAGCCCCACCCAAACACCCCGCAAATCTCTCTCTCTCCCTCTT
CCGTGCTGCGCCCATCGGTGTAGTCGGCGCGATGCAATGTTTTCGTGTTT
TGCCTGGTGTGCCATGCAGCCAACGCAACCAAAGCATCACCGCTGCCTGC
TCCATGCGATGAAAAGATACCAAGGCGTTCGTCTGACGTCACCCCTGCTT
TGCTGGACATGATGATCTGTTGAGGTGGTTATTGTTGCTGCCCTCGTAGT
CTAGTTCAACGGGCCCCATGGTTTCTCGCATCGAATAGCTCGATACAAAG
TCGTGGGATGGACCCACTATATTGTTCACCACAGTCGGCCGCTTGCTTCC
CCAAACCGACCCTCTCCGCTCCCCGTGTCCGCTTTGTGCTCTGATTTCTC
GCCTGACACTCTTCGTCGCATGGATGAATCTGGAGCACTTCAGGGAGGAC
CTGGGGTAAGATGTTTTCGTTGGTTCCATTCCGACATGCCAAAGTATTTC
ACGGTGTGCCCAGCACGTCCCATTACTCAGAGCATCACCGATCCCTGCTC
CATGCAATGAAAAGATACCAAGGCGTTGTTTTCGTGTGTTGCCTTGTGTG
CCCCGCACCCAACGCCAATAAGGCATCCCCGCTCCCTCGTGAATTTGATA
CGTCGATACCACGGCGTGCGATGGACCCTGTGTTGTTGCTACGTTTCTCG
TCATTCCCTATTTTTCCTTTTTGAGTGAACTTCTGTTAACACGGAAGGTG
GACTCCACCCTCCGCAACCCCGGTGCGCGTGGACCACCGGATGTTTGTCA
CTCCACTCATACATTAACTCGGTTACCTGTCCTGTTCATCAGGCATGAAC
AGTGGTGGCGGCGGCAACCAGACTGGGAACGCTGGCTGGAGCGGCGCCGG
ACACGCTGCGAGGGATTTCAGCGCGGAGGGCGCCGGAGAGAAGTACTTCG
GACTCCACCTGAAGGTTCCGGCGGACCAACTCTCAGCGACACTCCAACGC
CTGGTGCAGGAGGACGGGAGCCTCGAACCGCTCCCCCCACTCTGTGACAT
TGACGTCAGCCCAGGCTACCCCGGCGTCACCAAGGCGAAGGGCAAATTTG
GCCTGGACGAGGGCAGGGTGGTCCTGCGCGTCCACAACAGCAACAGGCCG
AACGTGTGCGTCAGTGAAGGAGCCATCCCCGTGACGACGAGAACGCCACC
TTTCAAGGTGCCGGCCTGGGCCATCGGTCCCCTACGCGCGGGAATGGTAG
TCATTCGGAACCAGAGCAACGCACCCGCGCTCCAGAAGAACAAGAAGAAC
TGACCGGCGTCCGTTCTCCCGAGTTTCGCGCATCGTGTTGGGCCGGGAAT
CCTCCTTTACTACCTTTTGCCCTATTCGTCCTCGCGATAGATAGTCGTGG
GCGCTCTTCTTCCGCGTTTCGACTGTTGGTTGTTGTCGCAGTCACTGTAG
GAAAAACACAAATTCAGTGGCATGTGTGGGTGTTGTGATAGCCATCACTT
TTGTTCCGGGCATGGGGTAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9114:2..1621+

>mRNA_S-firma_M_contig9114.20059.1 ID=mRNA_S-firma_M_contig9114.20059.1|Name=mRNA_S-firma_M_contig9114.20059.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=918bp|location=Sequence derived from alignment at S-firma_M_contig9114:2..1621+ (Sphaerotrichia firma Sfir_13m male)
ATGAACAGTGGTGGCGGCGGCAACCAGACTGGGAACGCTGGCTGGAGCGG
CGCCGGACACGCTGCGAGGGATTTCAGCGCGGAGGGCGCCGGAGAGAAGT
ACTTCGGACTCCACCTGAAGGTTCCGGCGGACCAACTCTCAGCGACACTC
CAACGCCTGGTGCAGGAGGACGGGAGCCTCGAACCGCTCCCCCCACTCTG
TGACATTGACGTCAGCCCAGGCTACCCCGGCGTCACCAAGGCGAAGGGCA
AATTTGGCCTGGACGAGGGCAGGGTGGTCCTGCGCGTCCACAACAGCAAC
AGGCCGAACGTGTGCGTCAGTGAAGGAGCCATCCCCGTGACGACGAGAAC
GCCACCTTTCAAGGTGCCGGCCTGGGCCATCGGTCCCCTACGCGCGGGAA
TGGTAGTCATTCGGAACCAGAGCAACGCACCCGCGCTCCAGAAGAACAAG
AAGAACTGAATGAACAGTGGTGGCGGCGGCAACCAGACTGGGAACGCTGG
CTGGAGCGGCGCCGGACACGCTGCGAGGGATTTCAGCGCGGAGGGCGCCG
GAGAGAAGTACTTCGGACTCCACCTGAAGGTTCCGGCGGACCAACTCTCA
GCGACACTCCAACGCCTGGTGCAGGAGGACGGGAGCCTCGAACCGCTCCC
CCCACTCTGTGACATTGACGTCAGCCCAGGCTACCCCGGCGTCACCAAGG
CGAAGGGCAAATTTGGCCTGGACGAGGGCAGGGTGGTCCTGCGCGTCCAC
AACAGCAACAGGCCGAACGTGTGCGTCAGTGAAGGAGCCATCCCCGTGAC
GACGAGAACGCCACCTTTCAAGGTGCCGGCCTGGGCCATCGGTCCCCTAC
GCGCGGGAATGGTAGTCATTCGGAACCAGAGCAACGCACCCGCGCTCCAG
AAGAACAAGAAGAACTGA
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