mRNA_S-firma_M_contig9067.20007.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_M_contig9067.20007.1
Unique Name	mRNA_S-firma_M_contig9067.20007.1
Type	mRNA
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)

Homology

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BLAST of mRNA_S-firma_M_contig9067.20007.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.050e-28
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  479 QVVSLAPRYVIVNATGRAIEVQQAGLGADVEPLKVCSGAQAAFHWPRAGT-PGWFGAPAAAGSKNRRLVLRFCGDXXXXXXXXXXXXXXXXTGWDWSGEILPEG 787
            +VV+LAPRYVIVNATGR+I+VQQAG  A VEPL V SG QAAFHWP+AG   GWFG  AA G+KNRR+VLRFCG                  GWDWSGEILPEG
Sbjct: 4150 KVVALAPRYVIVNATGRSIQVQQAGSPAGVEPLTVGSGGQAAFHWPQAGAGSGWFGGTAAVGAKNRRMVLRFCGGGSGDGEG----------GWDWSGEILPEG 4243

[Close]

BLAST of mRNA_S-firma_M_contig9067.20007.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.880e-28
Identity = 66/104 (63.46%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  479 QVVSLAPRYVIVNATGRAIEVQQAGLGADVEPLKVCSGAQAAFHWPRAGT-PGWFGAPAAAGSKNRRLVLRFCGDXXXXXXXXXXXXXXXXTGWDWSGEILPEG 787
            +VV+LAPRYVIVNATGR+I+VQQAG  A VEPL V SG QA FHWPRAG   GWFG  AA G+KNRR+VLRFCG                   WDWSGEILPEG
Sbjct: 3571 KVVALAPRYVIVNATGRSIQVQQAGSPAGVEPLTVGSGGQAEFHWPRAGAGSGWFGGTAAVGAKNRRMVLRFCGGSGDGEGS-----------WDWSGEILPEG 3663

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9067.20007.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9067.20007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LP20_ECTSI	1.050e-28	64.42	Vacuolar protein sorting-associated protein, putat...	[more]
A0A6H5JKL9_9PHAE	8.880e-28	63.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9067	contig	S-firma_M_contig9067:1061..3604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	102.1
Seed ortholog evalue	4.2e-19
Seed eggNOG ortholog	2880.D8LP20
KEGG ko	ko:K19525
GOs	GO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.	regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGs	COG5043@1,KOG1809@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000
Hectar predicted targeting category	other localisation
Exons	5
Model size	791
Cds size	789
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9067.20007.1	prot_S-firma_M_contig9067.20007.1	Sphaerotrichia firma Sfir_13m male	polypeptide	S-firma_M_contig9067 1062..3604 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828730.854881-CDS-S-firma_M_contig9067:1061..1270	1622828730.854881-CDS-S-firma_M_contig9067:1061..1270	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 1062..1270 -
1697105127.8393161-CDS-S-firma_M_contig9067:1061..1270	1697105127.8393161-CDS-S-firma_M_contig9067:1061..1270	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 1062..1270 -
1622828730.8669977-CDS-S-firma_M_contig9067:1727..1862	1622828730.8669977-CDS-S-firma_M_contig9067:1727..1862	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 1728..1862 -
1697105127.8490083-CDS-S-firma_M_contig9067:1727..1862	1697105127.8490083-CDS-S-firma_M_contig9067:1727..1862	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 1728..1862 -
1622828730.8785913-CDS-S-firma_M_contig9067:2389..2621	1622828730.8785913-CDS-S-firma_M_contig9067:2389..2621	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 2390..2621 -
1697105127.8567886-CDS-S-firma_M_contig9067:2389..2621	1697105127.8567886-CDS-S-firma_M_contig9067:2389..2621	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 2390..2621 -
1622828730.890676-CDS-S-firma_M_contig9067:3058..3164	1622828730.890676-CDS-S-firma_M_contig9067:3058..3164	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 3059..3164 -
1697105127.8651161-CDS-S-firma_M_contig9067:3058..3164	1697105127.8651161-CDS-S-firma_M_contig9067:3058..3164	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 3059..3164 -
1622828730.9024-CDS-S-firma_M_contig9067:3497..3604	1622828730.9024-CDS-S-firma_M_contig9067:3497..3604	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 3498..3604 -
1697105127.8743544-CDS-S-firma_M_contig9067:3497..3604	1697105127.8743544-CDS-S-firma_M_contig9067:3497..3604	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9067 3498..3604 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_M_contig9067:1061..3604-
coding sequence from alignment at S-firma_M_contig9067:1061..3604-

protein sequence of mRNA_S-firma_M_contig9067.20007.1

>prot_S-firma_M_contig9067.20007.1 ID=prot_S-firma_M_contig9067.20007.1|Name=mRNA_S-firma_M_contig9067.20007.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=263bp
QQQRSSGQREEAQVGEGLEPPRSARAHGGDDEGLLLRPLMLSYTAPEHQQ
HRRVRVCLEGSPWSAPFGLDEGGTDHVLEVSGGPKSAATAAVLSPKRKQG
QSQQEQEQEREEGWGWGAARRRRRRETAERQAFAVGVSVEAAPPPFERSS
LARSLARTQSGGFAGPAVRDRQRYGPRDRGPAGRAGSRRGASEGLQRCPG
RVPLAAGRHPRLVRRPRRGGLQEPPPGAAFLRRRRRRRRRGRGRGEGRRD
GVGLVWRDSAGGG

mRNA from alignment at S-firma_M_contig9067:1061..3604-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_M_contig9067.20007.1 ID=mRNA_S-firma_M_contig9067.20007.1|Name=mRNA_S-firma_M_contig9067.20007.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2544bp|location=Sequence derived from alignment at S-firma_M_contig9067:1061..3604- (Sphaerotrichia firma Sfir_13m male)
CAGCAGCAGCGCTCAAGCGGCCAGAGGGAAGAAGCGCAAGTTGGGGAGGG
GTTGGAGCCGCCGCGGTCCGCGAGGGCGCACGGGGGCGACGACGAGGGCC
TTCTGCTGTGAGTCCGGATGTTTTGTCACGGTTTAAGCTGAGGCCGCGTT
CTGCAGAACGGGGGGGCGGTGCGGCTGTCTGTAGGTGACGTCACGTGCTC
GTTTGTGGTGGTGGTGGTTGTCTCGGTACCGTGGGGCATCCGCGGCGCGC
GGCCCACCCCCACCTCGCCAAGTCTTTGTTTGTTCGCTTCGCCCTGTTGT
GATCGATGGCGCTGTAGGCAGGCCAGCGAGGTTGTTCATCCGTGACAAAT
GCCTACCCACTGCCACCCTTTTTGGAACTCCTCGCCTTACTCCGCCCTCG
GCTGTTTTTCGGCGGCTGGGCGGATGAAACGGAAAAAAAGACGGCCGCTG
ATGCTGTCTTACACGGCCCCGGAGCACCAGCAGCACAGGCGCGTGCGGGT
GTGCCTCGAGGGCTCGCCATGGTCCGCCCCGTTCGGCCTGGATGAGGTAA
CGCTGTTGGCTGGGACGGGGAGGGTTAGTGCGTATACAAGAGTCAGTACC
CCTGGAACGACTTATTTTTCACAGGACGGACGTACACGGCTGATGTATCA
TATGTAGAAAGCTCTGTCTGTAGCTTTGCTTGTAGCTTGTACTTGCACCA
CCAATGGTCCCTCGTTTCTGTTTCTGTTCGGATTGCCTTCTGGGCGCTTC
GGGCACGGCATCAATCCCTATCCCTGATTAAAGTTGTTAGTTGTTCTTGT
GGCTTTTTTCTTTTTGTTCGCGTGCGCTGCTTGTTCACCACGATAAACTC
AGCTCACATCCCGCGGCGGGCACCTCGATCCCGGGAGCTTGACCTCCCCC
CCCCCCCCTCCTCCGCCCCCGTTTTCCACGTACTTCACCTTGGCTGGTGC
CTTGTGCTCGCTGCGCCTGTGGTCATCCTTCAGGGTGGTACCGACCACGT
TCTGGAAGTCAGCGGGGGGCCGAAGTCAGCGGCGACGGCAGCGGTGCTCA
GCCCGAAACGCAAGCAAGGCCAGTCGCAGCAAGAGCAAGAGCAAGAGCGA
GAGGAAGGGTGGGGGTGGGGGGCGGCCCGACGGCGGCGGCGGCGGGAGAC
GGCGGAGCGGCAGGCGTTCGCGGTCGGGGTTAGCGTCGAGGCGGCCCCGC
CCCCGTTCGAGCGCACCAAGGCAAGCAAGGGAGGGAGGAAGGCGTCGGCT
GGTGCCTCGTGGATGGAGTGCGTCCGTCTGTTGCGGCGGCGGCGGCGGCG
GCGGCGGTGTCGGGAGGAACGGGATTTTCTTTAGCTTTTGCTCTTTCACG
GCTAGCCTGCGAAGCGGGAGGGTGGGGCGGCGCCGGTCTGTGGTGGTTTT
GCCCTGCCGAGACCCGTGTTTTTGCCCTGTTTCGCACGCTCGGCCTGTTT
GCGGGGGGCATCCCTGTCGAAGAGCCGCGCCACAGCGGAGCGCGAACGGC
GGTGCTTGTCTTGTTGCGTTGGGGCGACAAAAGTGTTGCGTTTCGACGCC
CGATGACGTGCTGCTGTCGCGCAGGGCGTTGCCTCGTAGACCCTCTGCCG
CAACCGCTCCTGTTCCGAATTTTTGTGTGTGATGTCTTGTCTTGTCTTGT
TTTCGGCTGACTTGCGATGATAGCTCCCGTCTCTTCGTCCACGCCTCCGG
CACGGTGACCCAACCATGACCAACAAAACCGATGGTTGACTCGCTCGCTC
GCTCGCTCGCTCGCTCGCACCCAATCAGGTGGTTTCGCTGGCCCCGCGGT
ACGTGATCGTCAACGCTACGGGCCGCGCGATCGAGGTCCAGCAGGCAGGG
CTGGGAGCCGACGTGGAGCCTCTGAAGGTGGGCTGGGGTACCTTTTCGAG
GAAGAGAATCGGCGCAAAAGCGTCGTTTGTCGGCTCAACGCGGGGCCGCG
CGCGCGTCTTTTGTTTACGCCTTCGGACACTGCCGTGGATCTCTCGCGTG
CCCTTAGGAGAAGGACGCCGCCACGGAGCGCTCGAGCGGTAGGCGGACGG
GGGTTCGGATTGCCCCGTCACCGGCGCCAGACTCGCACAGTACGGTCTGT
TCGAAAAGCGCGTGGCTCCGTGGCAGCCGGCCCCGCCCACCCCAAGTGTG
TGTGTAGTTTTGTGCGCTTGATGCGAACAACGCGACAATCTTGCCATCTC
TCTCGACGAAAACCAATGGCCCCCCCCCGACCCCCCTCGCGTGCCCCCCT
CCCTACCTGTCGTCGTTGCGTTGCGCCCCCCAAAACAACAACCCCAAACC
AACCCACCGAAACTAAACAAAAACAAAAAAAAAGGTCTGCAGCGGTGCCC
AGGCCGCGTTCCACTGGCCGCGGGCCGGCACCCCCGGCTGGTTCGGCGCC
CCCGCCGCGGCGGGCTCCAAGAACCGCCGCCTGGTGCTGCGTTTCTGCGG
CGACGGCGACGGCGACGGCGACGGGGGCGGGGGCGGGGAGAAGGAAGAAG
AGACGGGGTGGGACTGGTCTGGCGAGATTCTGCCGGAGGGGGGC

Coding sequence (CDS) from alignment at S-firma_M_contig9067:1061..3604-

>mRNA_S-firma_M_contig9067.20007.1 ID=mRNA_S-firma_M_contig9067.20007.1|Name=mRNA_S-firma_M_contig9067.20007.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1578bp|location=Sequence derived from alignment at S-firma_M_contig9067:1061..3604- (Sphaerotrichia firma Sfir_13m male)
CAGCAGCAGCGCTCAAGCGGCCAGAGGGAAGAAGCGCAAGTTGGGGAGGG
GTTGGAGCCGCCGCGGTCCGCGAGGGCGCACGGGGGCGACGACGAGGGCC
TTCTGCTCAGCAGCAGCGCTCAAGCGGCCAGAGGGAAGAAGCGCAAGTTG
GGGAGGGGTTGGAGCCGCCGCGGTCCGCGAGGGCGCACGGGGGCGACGAC
GAGGGCCTTCTGCTACGGCCGCTGATGCTGTCTTACACGGCCCCGGAGCA
CCAGCAGCACAGGCGCGTGCGGGTGTGCCTCGAGGGCTCGCCATGGTCCG
CCCCGTTCGGCCTGGATGAGACGGCCGCTGATGCTGTCTTACACGGCCCC
GGAGCACCAGCAGCACAGGCGCGTGCGGGTGTGCCTCGAGGGCTCGCCAT
GGTCCGCCCCGTTCGGCCTGGATGAGGGTGGTACCGACCACGTTCTGGAA
GTCAGCGGGGGGCCGAAGTCAGCGGCGACGGCAGCGGTGCTCAGCCCGAA
ACGCAAGCAAGGCCAGTCGCAGCAAGAGCAAGAGCAAGAGCGAGAGGAAG
GGTGGGGGTGGGGGGCGGCCCGACGGCGGCGGCGGCGGGAGACGGCGGAG
CGGCAGGCGTTCGCGGTCGGGGTTAGCGTCGAGGCGGCCCCGCCCCCGTT
CGAGCGCAGGTGGTACCGACCACGTTCTGGAAGTCAGCGGGGGGCCGAAG
TCAGCGGCGACGGCAGCGGTGCTCAGCCCGAAACGCAAGCAAGGCCAGTC
GCAGCAAGAGCAAGAGCAAGAGCGAGAGGAAGGGTGGGGGTGGGGGGCGG
CCCGACGGCGGCGGCGGCGGGAGACGGCGGAGCGGCAGGCGTTCGCGGTC
GGGGTTAGCGTCGAGGCGGCCCCGCCCCCGTTCGAGCGCAGCTCGCTCGC
TCGCTCGCTCGCTCGCACCCAATCAGGTGGTTTCGCTGGCCCCGCGGTAC
GTGATCGTCAACGCTACGGGCCGCGCGATCGAGGTCCAGCAGGCAGGGCT
GGGAGCCGACGTGGAGCCTCTGAAGGCTCGCTCGCTCGCTCGCTCGCTCG
CACCCAATCAGGTGGTTTCGCTGGCCCCGCGGTACGTGATCGTCAACGCT
ACGGGCCGCGCGATCGAGGTCCAGCAGGCAGGGCTGGGAGCCGACGTGGA
GCCTCTGAAGGTCTGCAGCGGTGCCCAGGCCGCGTTCCACTGGCCGCGGG
CCGGCACCCCCGGCTGGTTCGGCGCCCCCGCCGCGGCGGGCTCCAAGAAC
CGCCGCCTGGTGCTGCGTTTCTGCGGCGACGGCGACGGCGACGGCGACGG
GGGCGGGGGCGGGGAGAAGGAAGAAGAGACGGGGTGGGACTGGTCTGGCG
AGATTCTGCCGGAGGGGGGGTCTGCAGCGGTGCCCAGGCCGCGTTCCACT
GGCCGCGGGCCGGCACCCCCGGCTGGTTCGGCGCCCCCGCCGCGGCGGGC
TCCAAGAACCGCCGCCTGGTGCTGCGTTTCTGCGGCGACGGCGACGGCGA
CGGCGACGGGGGCGGGGGCGGGGAGAAGGAAGAAGAGACGGGGTGGGACT
GGTCTGGCGAGATTCTGCCGGAGGGGGG