mRNA_S-firma_M_contig905.19987.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig905.19987.1 vs. uniprot
Match: D8LJ93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ93_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 1.570e-148 Identity = 294/510 (57.65%), Postives = 329/510 (64.51%), Query Frame = 2
Query: 59 GAVSVQDPSSLRREYEALAAKNVGDQELLNHMKKLLRPPP--AANEPAEKAXXXXXXXXXXSSVRRGSATRSSVEGAP-AGSSGRRGSA------VPGEGTXXXXXXXXXXARPNSHNGRLSYSSSTLASQQAQQSRRGSNARRQSVDGDRPLSAPQTKPAVPRQRPRSSVGDKNDASGKPTKSRRRSYLGQPTTGGSGDAVGTAAEVAVSAAAADDAAPAEGDPAQDADP--------DKMQIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHASPAEGSEPQPAPEPAMDSITIYSGTKLFWRTRLDVELFMQQHKTVNAVQVLVFDVSTNREIAQVWISWNNVVAKLDPKDMKKEMEAAERAFYNLGMKPTPENVEAEATRKATVSFIIKRIQVDEIVEEGVEPGPSKSYKVSLLQMAADDDA-NLLVDQPEGVNPTFSRALMKRASMQEVNEVMTSLRRSLGDVSKDAQAAVASLGSVEGVVEQGRRGSVEVARRVSIQGS 1534
G+V V DP++LR+EYEA+AA++VGD+ELLNHMKKL+ P AA++P K SSVRR S V+ A AG RRGS V G G X +RP SHN R R SVDGDRPLSAPQTKP VP+QRPRSS+G+KND SGKPTKSRRRSYLGQPT G G AVG AA PAQD + M+IDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHA PAEGS P P EP MDSITIYSG+KLFWRTRL+VE+FMQQHKT N NVV +M+AAERAF+NLGMKPTPENV+AEATRKA VSFIIKRIQVD GP+ S+KVS+LQMAAD+D LLV++PEGVN TFSRA+ KRAS+QEV EVMTSLR+SLGDV+ AQAA ASL G VEQGRRGSV VARR SIQGS
Sbjct: 5 GSVGVVDPTALRKEYEAMAAQDVGDEELLNHMKKLIISPKTEAADKPKTKETAPNVEGTRRSSVRRNSGPAPGVDSAAVAGPKARRGSGGIAASGVEG-GAAGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXX--RSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGVAVGAAAAXXXXXXXXXXXXA----PAQDEXXXXXXXXXVEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHAPPAEGSNPPP--EPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTAN-----------------------NVV----------QMDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDRDESPEEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSVXVARRASIQGS 472
BLAST of mRNA_S-firma_M_contig905.19987.1 vs. uniprot
Match: A0A6H5K5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G4_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 8.610e-146 Identity = 271/484 (55.99%), Postives = 305/484 (63.02%), Query Frame = 2
Query: 59 GAVSVQDPSSLRREYEALAAKNVGDQELLNHMKKLLRPPPAANEPAEKAXXXXXXXXXXSSVRRGSATRSSVEGAPAGSSGRRGSAVPGEGTXXXXXXXXXXARPNSHNGRLSYSSSTLASQQAQQSRRGSNARRQSVDGDRPLSAPQTKPAVPRQRPRSSVGDKNDASGKPTKSRRRSYLGQPTTGGSGDAVGTAAEVAVSAAAADDAAPAEGDPAQDA--------DPDKMQIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHASPAEGSEPQPAPEPAMDSITIYSGTKLFWRTRLDVELFMQQHKTVNAVQVLVFDVSTNREIAQVWISWNNVVAKLDPKDMKKEMEAAERAFYNLGMKPTPENVEAEATRKATVSFIIKRIQVDEIVEEGVEPGPSKSYKVSLLQMAADDDA-NLLVDQPEGVNPTFSRALMKRASMQEVNEVMTSLRRSLGDVSKDAQAAVASLGSVEGVVEQ 1483
G+V V DP+ LR+EYEA+AAK VGD+ELLNHMKKL+ P + RR SNARR SVD DRPLSAPQTKP VP+QRPRSS+G++ND SGKPTKSRRRSYLGQP GDAVG AA VAV A+AA D A PAQD D ++ DSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSP HA PAEGS P P EP MDSITIYSG+KLFWRTRL+VE+FMQQHKT N V VW+SW+ VVAKLD K+MK EM+AAERAF+NLGMKPTPENV+AEATRKA VSFIIKRIQVD GP+ S+KVS+LQMAAD+D LL+++PEGVN TFSRA+ KRAS+QEV EVM SLR+SLGDV+ AQAA ASL G VEQ
Sbjct: 5 GSVGVVDPAVLRKEYEAMAAKEVGDEELLNHMKKLIISPQSGQ------------------------------------------------------------------------------------RRASNARRSSVDSDRPLSAPQTKPPVPKQRPRSSLGEENDGSGKPTKSRRRSYLGQP----GGDAVGAAAAVAVDASAAVDGAA----PAQDEXXXXXXXXDVQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPP--EPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTANNV---------------VWVSWSAVVAKLDAKEMKNEMDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDREDSPEEAGGPAVSHKVSMLQMAADEDGMQLLMEKPEGVNDTFSRAMSKRASIQEVAEVMASLRKSLGDVNTAAQAAAASLDGATGTVEQ 379
BLAST of mRNA_S-firma_M_contig905.19987.1 vs. uniprot
Match: A0A7S3H489_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H489_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.140e-11 Identity = 50/185 (27.03%), Postives = 99/185 (53.51%), Query Frame = 2
Query: 737 IDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHASPAEGSE--------PQPAPEPAMDSIT-----------IYSGTKLFWRTRLDVELFMQQHKTVNAVQVLVFDVSTNREIAQVWISWNNV---VAKLDPKDMK--KEMEAAERAFYNLGMKPTPENVEAE-ATRKATVSFIIKRIQVD 1216
+DSW+SV+ QP C C M F ++ D+H+K+S +HA E ++ P + + + + +Y+G+K FWRT++++E+ M H ++V+ FD + E ++++++ + + KL D++ K E AE+ F++ G + E+V E + V++I++R+Q+D
Sbjct: 142 VDSWDSVTHQPFCTTCQMAFKSQDFLDRHVKFSDLHAKNLEKAKGVIAVDKNPITSTDAGVGMVQQSQVEGVHYKLLYTGSKFFWRTQMNIEIDMYLHLLPYVIEVISFDPIKDHEATRIYLNYYTIQSTLEKLVSSDLEAAKLKELAEQRFHSHGEEA--ESVLREHLLLQRVVTYILQRLQLD 324 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig905.19987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig905.19987.1 >prot_S-firma_M_contig905.19987.1 ID=prot_S-firma_M_contig905.19987.1|Name=mRNA_S-firma_M_contig905.19987.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=495bp MGGAVSVQDPSSLRREYEALAAKNVGDQELLNHMKKLLRPPPAANEPAEKback to top mRNA from alignment at S-firma_M_contig905:16419..22095+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig905.19987.1 ID=mRNA_S-firma_M_contig905.19987.1|Name=mRNA_S-firma_M_contig905.19987.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=5677bp|location=Sequence derived from alignment at S-firma_M_contig905:16419..22095+ (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig905:16419..22095+ >mRNA_S-firma_M_contig905.19987.1 ID=mRNA_S-firma_M_contig905.19987.1|Name=mRNA_S-firma_M_contig905.19987.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2970bp|location=Sequence derived from alignment at S-firma_M_contig905:16419..22095+ (Sphaerotrichia firma Sfir_13m male)back to top |