mRNA_S-firma_M_contig9.19912.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9.19912.1
Unique NamemRNA_S-firma_M_contig9.19912.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 298 bits (764), Expect = 1.650e-99
Identity = 137/227 (60.35%), Postives = 175/227 (77.09%), Query Frame = 1
Query:    1 KQISRDYDRYNPWLWIDIETTGLDPATSEILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQFFDKTVGANGQNLSSYDVSNTAFSTKSPHRL-ALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRF 678
            K  +R YDR NPW WIDIET+ LD +TS++LE+ ++VTD+ L  WDSLH+VIHHP+NILMLKSS WCK KF S+SYGGNGLFD CHY+NT+  DA  ++ NFFE+Y+++++G GRP    R FFD+T GANG  LS YD+S    +     R   LL GSTV+FDR  IE HFP L+++L+HKNVDVT+LLETAKRF PD+++ KPKP+  HRAMDDILDS+ LY++
Sbjct:   11 KVFNRGYDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEIGRGRPAHKSRTFFDRTSGANGMKLSPYDISCQVQNFTGTRRSQGLLAGSTVYFDRRIIEKHFPVLRKYLSHKNVDVTSLLETAKRFHPDLIENKPKPTMVHRAMDDILDSLTLYKY 237          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 271 bits (693), Expect = 6.750e-89
Identity = 132/232 (56.90%), Postives = 169/232 (72.84%), Query Frame = 1
Query:   10 SRDYDRYNPWLWIDIETTGLDPATSEILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTG--RPQKHDRQFFDKTVGANGQNLSSY-----DVSNTAFSTK--SPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRF 678
            ++ Y+RYNPW WID+ET+ LD + SE+LEV ++VTD  L  WDSLH+VIHHP+NILMLKSS WCK++F S  YGGNGLFD CHY+ T+  DA   +  FFE+Y ++ +GTG  RP   +R FFD+T G NG  LS       D+     +T   S  + ALL GSTV+FDR  IE HFP L+++L+HKN+DVTT+LETAKRFRPD++Q KPKP   HRAMDDI+DS+ LYR+
Sbjct:    3 NKTYERYNPWFWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCTHRDIPKQCTTTPGGSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.220e-66
Identity = 106/234 (45.30%), Postives = 155/234 (66.24%), Query Frame = 1
Query:    1 KQISRDYDRYNPWLWIDIETTGLDPATSEILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQK--HDRQFFDKTVGANGQNLSSYDVSNTAFST---KSPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKE 687
            K    DY+   PW WID+ETTGLD  T+ ILE+ ++VTD  L   DS+ +V+HHP +IL+ +SSAWC+RKF  +  GGNGLF++CH++  ++ +A + +WNFF+ Y+ +  G     +    + FFD+T+GANG  L + D S         +S ++  LL GSTV+FDR F+  +FP LK F +++ VDV+T LE  +R+RPD+    P+ + +HRA DDILDSI+L +FFKE
Sbjct:   31 KTSKHDYENEFPWFWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKDVGGRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKE 264          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.920e-31
Identity = 74/226 (32.74%), Postives = 121/226 (53.54%), Query Frame = 1
Query:   37 WLWIDIETTGLDPATSE--ILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQFFD----KTVGANGQNLSSY-----DVSNTAFSTKSPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFF 681
            WL++DIE T LD       ILE+   + D S+   D+ H++++ P +I+   +S WCK++F S+  GGN LF  C  +  T   A FML  F   +   +       +  R+FF     +T+ A  +  +S      DV  T       H   +L G +V+FDR  + + +P L+  + HK +++++LLE A+++RPDIL   P     HRA+ D+L+S++L R+F
Sbjct:    9 WLFLDIECTQLDYQAHNFGILEIAAAIVDNSMEVIDTFHVIVNQPAHIIAA-ASKWCKKRFCSRLEGGNDLFAQCDASIITEAQAGFMLEQFIMKHAKERHMQPDEAEQKRRFFQAAELETIDAAIETETSEAFIEKDVEKTQGGIS--HFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWF 231          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.220e-29
Identity = 78/258 (30.23%), Postives = 124/258 (48.06%), Query Frame = 1
Query:    1 KQISRDYDRYNPWLWIDIETTGLDPATSE--ILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGR-----PQKHDRQFFDKTV---------GANGQNLSSYDV----SNTAFSTKSPHRL------ALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKEEVF 696
            +   R YD    W+W DIE TGLDP +    +LE+   VT   L   D+ H++IH P  +L   +S+WC   F  +  GGN LF  C  +  +  +A  +L  F   +   +          P+   ++   KT           A   ++ + D     +  A+    P          +  G + +FDRG I   FP L++++ HK +DVT++LE  +R+RPD+L++ P P  THRA+ D+L+SI L R+    +F
Sbjct:   12 EDFPRRYDA--TWIWCDIECTGLDPTSPGFGVLEIAAAVTGDDLTVQDTFHVIIHQPDRVLA-GASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEVPEAVVKRNVFKTAEFGDVIEDGDAMAGDIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRWVMTNLF 266          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A835ZEI1_9STRA (Ribonuclease H-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.780e-29
Identity = 73/245 (29.80%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    4 QISRDYDRYNP-WLWIDIETTGLDPATSE--ILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQ----------------FFDKTVGANGQNLSSYDVSNTAFSTKSPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFF 681
            Q+    +RYN  W+ +DIE T LD  + +  ILE+   V D ++   D+ H+++H    I+   SS WCK++F S+  GGN LF  C  +  T E A  ML  F   + + K       +HD Q                   + V    + ++         ST   H   +L G +V+FDR  + + +P L+ ++ HK +++++LLE  +R+RPD+L++ P     HRA+ D++++++L R+F
Sbjct:    6 QLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIG-NSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKH-AKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWF 248          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.830e-27
Identity = 78/254 (30.71%), Postives = 116/254 (45.67%), Query Frame = 1
Query:   13 RDYDRYNPWLWIDIETTGLDPATSE--ILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNK-----VGTGRPQKHDRQFFDKTV-------------GANGQNLSSYDVSNTAFSTKSP----HRL--ALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKEEVF 696
            R YD    WLW DIE TGLDPA     ILE+   +T   L   D+ H+V+H P  +L   +S WC   F  +  GGN LF+    +  +   A  ML  F   +   +          P+   ++   KT              G   +             T  P    H +   +  G + +FDRG I   FP L++++ HK +DVT++LE  +R+RPD+L+  P P   HRA+ D+L+S+ L R+    +F
Sbjct:   27 RRYDAI--WLWCDIECTGLDPAAPGFGILEIAAAITGDDLTVQDTFHVVVHQPPRVLA-GASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEGPEAACKRSMFKTAEFGDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRWVMTNLF 277          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A0V0R1R0_PSEPJ (Ribonuclease H-like domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R1R0_PSEPJ)

HSP 1 Score: 103 bits (256), Expect = 1.030e-23
Identity = 66/223 (29.60%), Postives = 111/223 (49.78%), Query Frame = 1
Query:   31 NPWLWIDIETTGLDPATSEILEVNVIVTDASLVPW-DSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQFFDKTVGANGQNLSSYDVSNTAFSTKSPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKEEVF 696
            NP +W+D+E TGLD  T++I+E+ V+VTD +L    +   I++     +L  K  AWC     +K++G +GL   C  +  + E A   + +F +    NK             F+  +G                            G++VH DR FI  + P L  FL+++ +DV+T+ E A+R+ P+ ++ KP     HRA+DDI++SI   +F+K+ +F
Sbjct:    9 NPIVWVDLEMTGLDHNTNQIMEIAVLVTDGNLEQTIEGPEIIVKAEKQVLE-KMDAWC-----TKTHGESGLTQKCLESKISIEQAEKQVLDFLKNLNINK-------------FEAQLG----------------------------GNSVHMDRRFINKYMPQLDDFLHYRIIDVSTIKELARRWYPEEMEKKPVKKLCHRALDDIIESIEELKFYKKNIF 184          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: Q056X5_BUCCC (Oligoribonuclease n=1 Tax=Buchnera aphidicola subsp. Cinara cedri (strain Cc) TaxID=372461 RepID=Q056X5_BUCCC)

HSP 1 Score: 91.3 bits (225), Expect = 3.330e-19
Identity = 62/220 (28.18%), Postives = 106/220 (48.18%), Query Frame = 1
Query:   40 LWIDIETTGLDPATSEILEVNVIVTDASLVPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQFFDKTVGANGQNLSSYDVSNTAFSTK-SPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKEEVF 696
            +W+D+ETTGL+P   +I+E++ I+TD +L        ++    NI++ +     K++F  K          CH              NFF             Q H +    K +  + ++  S +     F  K  P  ++ +CG+T+  DR F+ YH P LK +  ++N+DV+++ E  KR++P IL  K K    HR   D+++SI   +F+KE +F
Sbjct:    9 IWVDLETTGLNPKIHKIIEISTIITDKNLN-------ILEIGPNIIIFQ-----KKEFLRKI---------CH--------------NFF-------------QIHKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKSYFYYRNIDVSSINELIKRWKPKILN-KIKKKKNHRTKSDLIESIQELKFYKENIF 179          
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Match: A0A4V0WXK9_9ACTN (Oligoribonuclease n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A4V0WXK9_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 9.600e-19
Identity = 60/223 (26.91%), Postives = 103/223 (46.19%), Query Frame = 1
Query:   40 LWIDIETTGLDPATSEILEVNVIVTDASL-VPWDSLHIVIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLWNFFEFYTSNKVGTGRPQKHDRQFFDKTVGANGQNLSSYDVSNTAFSTKSPHRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDILQAKPKPSSTHRAMDDILDSINLYRFFKEEVFDKV 705
            +W+D+E TGLDPAT  I+E+  ++TD  L +  +   +VI+ P  +L           F  + +  +GL  +   +  + E A      F       K     P                                   R   LCG+++  DR F+  + P ++ FL++++VDV+T+ E AKR+ P +  ++P  S THRA+DD+ +SI   +F++E VF ++
Sbjct:    3 VWMDLEMTGLDPATEVIVEIATLITDDELNIVAEGPDLVINQPETVLKAMDP------FVVEMHTTSGLLTAIRESTVSLEQAGAATLEFI------KQHIAEP-----------------------------------RTIPLCGNSIGTDRRFLAKYLPEIENFLHYRSVDVSTIKELAKRWYPGLEISRPTKSGTHRALDDVRESIRELKFYRENVFKEI 178          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9.19912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG6_9PHYC1.650e-9960.35Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
Q6XM84_9PHYC6.750e-8956.90FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPG5_ECTSI1.220e-6645.30EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
A0A835Z4U2_9STRA3.920e-3132.74Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A836CDV0_9STRA1.220e-2930.23Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEI1_9STRA1.780e-2929.80Ribonuclease H-like domain-containing protein n=2 ... [more]
A0A835YX31_9STRA6.830e-2730.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0V0R1R0_PSEPJ1.030e-2329.60Ribonuclease H-like domain n=1 Tax=Pseudocohnilemb... [more]
Q056X5_BUCCC3.330e-1928.18Oligoribonuclease n=1 Tax=Buchnera aphidicola subs... [more]
A0A4V0WXK9_9ACTN9.600e-1926.91Oligoribonuclease n=4 Tax=Actinobacteria TaxID=201... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9contigS-firma_M_contig9:11895..12602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue1.8e-53
Seed eggNOG ortholog2880.D8LPG5
Preferred nameREXO2
KEGG rclassRC00408
KEGG koko:K01179,ko:K01835,ko:K13288
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG ModuleM00549
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
EggNOG free text desc.RNA phosphodiester bond hydrolysis, exonucleolytic
EggNOG OGsCOG1949@1,KOG3242@2759
EC3.2.1.4,5.4.2.2
COG Functional cat.A
CAZyGH5,GH9
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828721.1348937-CDS-S-firma_M_contig9:11894..126021622828721.1348937-CDS-S-firma_M_contig9:11894..12602Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 11895..12602 +
1697105122.0513155-CDS-S-firma_M_contig9:11894..126021697105122.0513155-CDS-S-firma_M_contig9:11894..12602Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9 11895..12602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9.19912.1prot_S-firma_M_contig9.19912.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9 11895..12602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9.19912.1

>prot_S-firma_M_contig9.19912.1 ID=prot_S-firma_M_contig9.19912.1|Name=mRNA_S-firma_M_contig9.19912.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=236bp
KQISRDYDRYNPWLWIDIETTGLDPATSEILEVNVIVTDASLVPWDSLHI
VIHHPMNILMLKSSAWCKRKFSSKSYGGNGLFDSCHYANTTYEDAAFMLW
NFFEFYTSNKVGTGRPQKHDRQFFDKTVGANGQNLSSYDVSNTAFSTKSP
HRLALLCGSTVHFDRGFIEYHFPALKRFLNHKNVDVTTLLETAKRFRPDI
LQAKPKPSSTHRAMDDILDSINLYRFFKEEVFDKV*
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mRNA from alignment at S-firma_M_contig9:11895..12602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9.19912.1 ID=mRNA_S-firma_M_contig9.19912.1|Name=mRNA_S-firma_M_contig9.19912.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=708bp|location=Sequence derived from alignment at S-firma_M_contig9:11895..12602+ (Sphaerotrichia firma Sfir_13m male)
AAACAGATCTCGAGGGATTATGACAGGTACAATCCATGGCTGTGGATTGA TATCGAAACAACGGGGTTGGACCCGGCGACGTCCGAAATACTCGAGGTGA ACGTCATCGTGACAGACGCCAGCCTCGTGCCGTGGGACTCCCTGCACATT GTCATTCACCACCCCATGAATATTCTGATGCTGAAATCTTCGGCGTGGTG CAAAAGGAAGTTCTCGTCCAAGTCTTACGGTGGAAATGGGTTGTTCGACA GTTGTCACTACGCAAACACGACGTACGAAGACGCGGCGTTCATGCTCTGG AATTTCTTCGAGTTCTACACCTCCAACAAAGTCGGGACAGGAAGACCTCA GAAACATGACCGACAATTCTTCGACAAGACTGTCGGAGCCAACGGTCAAA ACCTATCCAGCTACGACGTATCCAACACAGCTTTTTCCACTAAAAGTCCT CACCGACTCGCCTTACTCTGTGGATCGACCGTCCACTTCGATAGAGGGTT CATCGAATACCACTTTCCTGCCCTGAAAAGGTTCCTCAATCACAAGAACG TCGACGTAACAACTTTGTTGGAAACAGCCAAGCGTTTCCGTCCCGATATT CTTCAAGCTAAACCGAAGCCTTCTTCAACGCACCGGGCGATGGATGACAT TCTGGACTCCATCAACCTCTACCGGTTTTTCAAAGAAGAAGTCTTCGACA AAGTATGA
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Coding sequence (CDS) from alignment at S-firma_M_contig9:11895..12602+

>mRNA_S-firma_M_contig9.19912.1 ID=mRNA_S-firma_M_contig9.19912.1|Name=mRNA_S-firma_M_contig9.19912.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1416bp|location=Sequence derived from alignment at S-firma_M_contig9:11895..12602+ (Sphaerotrichia firma Sfir_13m male)
AAACAGATCTCGAGGGATTATGACAGGTACAATCCATGGCTGTGGATTGA
TATCGAAACAACGGGGTTGGACCCGGCGACGTCCGAAATACTCGAGGTGA
ACGTCATCGTGACAGACGCCAGCCTCGTGCCGTGGGACTCCCTGCACATT
GTCATTCACCACCCCATGAATATTCTGATGCTGAAATCTTCGGCGTGGTG
CAAAAGGAAGTTCTCGTCCAAGTCTTACGGTGGAAATGGGTTGTTCGACA
GTTGTCACTACGCAAACACGACGTACGAAGACGCGGCGTTCATGCTCTGG
AATTTCTTCGAGTTCTACACCTCCAACAAAGTCGGGACAGGAAGACCTCA
GAAACATGACCGACAATTCTTCGACAAGACTGTCGGAGCCAACGGTCAAA
ACCTATCCAGCTACGACGTATCCAACACAGCTTTTTCCACTAAAAGTCCT
CACCGACTCGCCTTACTCTGTGGATCGACCGTCCACTTCGATAGAGGGTT
CATCGAATACCACTTTCCTGCCCTGAAAAGGTTCCTCAATCACAAGAACG
TCGACGTAACAACTTTGTTGGAAACAGCCAAGCGTTTCCGTCCCGATATT
CTTCAAGCTAAACCGAAGCCTTCTTCAACGCACCGGGCGATGGATGACAT
TCTGGACTCCATCAACCTCTACCGGTTTTTCAAAGAAGAAGTCTTCGACA
AAGTATGAAAACAGATCTCGAGGGATTATGACAGGTACAATCCATGGCTG
TGGATTGATATCGAAACAACGGGGTTGGACCCGGCGACGTCCGAAATACT
CGAGGTGAACGTCATCGTGACAGACGCCAGCCTCGTGCCGTGGGACTCCC
TGCACATTGTCATTCACCACCCCATGAATATTCTGATGCTGAAATCTTCG
GCGTGGTGCAAAAGGAAGTTCTCGTCCAAGTCTTACGGTGGAAATGGGTT
GTTCGACAGTTGTCACTACGCAAACACGACGTACGAAGACGCGGCGTTCA
TGCTCTGGAATTTCTTCGAGTTCTACACCTCCAACAAAGTCGGGACAGGA
AGACCTCAGAAACATGACCGACAATTCTTCGACAAGACTGTCGGAGCCAA
CGGTCAAAACCTATCCAGCTACGACGTATCCAACACAGCTTTTTCCACTA
AAAGTCCTCACCGACTCGCCTTACTCTGTGGATCGACCGTCCACTTCGAT
AGAGGGTTCATCGAATACCACTTTCCTGCCCTGAAAAGGTTCCTCAATCA
CAAGAACGTCGACGTAACAACTTTGTTGGAAACAGCCAAGCGTTTCCGTC
CCGATATTCTTCAAGCTAAACCGAAGCCTTCTTCAACGCACCGGGCGATG
GATGACATTCTGGACTCCATCAACCTCTACCGGTTTTTCAAAGAAGAAGT
CTTCGACAAAGTATGA
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