mRNA_S-firma_M_contig8951.19854.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig8951.19854.1
Unique NamemRNA_S-firma_M_contig8951.19854.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig8951.19854.1 vs. uniprot
Match: D8LFA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA6_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 4.060e-30
Identity = 90/154 (58.44%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:  208 QVQMAGLQEKTLASRLAYERLQADKIAADVSRLRKAEEQKRLLGREATVAKERSAVAEEARRAAESRVSTLEDRLLSLGREEEKDSKAEAEAAEEATRTARSKANQIEALREKVARMEASVAAERTSREEAEQGLERALSAKGKLERFLEGVLR 669
            QVQMAGLQEK+LASRLAYERLQADK A+D+ R+RKAEEQKR L RE   AK++S                        G+EEEK S AEA+A     RT RSKA+Q + LREKVAR+EASV          EQGLERALSAK KLERFLEGVL+
Sbjct:    2 QVQMAGLQEKSLASRLAYERLQADKAASDL-RIRKAEEQKRQLARETASAKDKSXXXXXXXXXXXXXXXXXXXXXXXXGKEEEKSSSAEAKAXXXXXRTXRSKADQADVLREKVARVEASVRXXXXXXXXXEQGLERALSAKVKLERFLEGVLK 154
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BLAST of mRNA_S-firma_M_contig8951.19854.1 vs. uniprot
Match: A0A7R9YA16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.570e-12
Identity = 73/206 (35.44%), Postives = 118/206 (57.28%), Query Frame = 1 
Query:   58 SAGSKAVLSALRALQDKIRKLENERDRASVEAGTLRRQIAALQTENDRTAQVQMAGLQEKTLASRLAYERLQADKIAADVSRLRKAEEQKRLLGREATVAKERSAVAEEARRAAESRVSTLEDRLLSLGREEEKDSKAEAEAAEEATRTARSKANQIEA-LREKVARMEASVAAERTSREEAEQGLERALSAKGKLERFLEGVLRV 672
            S+GS+AVLSALRALQDKI++LE ER +A  E   L++Q+   +    R+ +++     E+  ASRLA ER+ A+K   ++ RL KAEE K  L +E    ++ ++ +E ARR A+  +S ++  +  L  E + D KA+   A E     R + +Q E  L   + ++E  +  E+T R E       A++ K +L+ FL+GV+ +
Sbjct:  225 SSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEM-RLSKAEEHKASLRKEIDALRKAASESEIARRTADGNLSVVQGHVRELEGELD-DMKAQLAVAHEELAKERDERDQREIELGVVIQKIEEQLREEKTMRCE-------AVTEKERLDEFLKGVVAI 421
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8951.19854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA6_ECTSI4.060e-3058.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YA16_9STRA9.570e-1235.44Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8951contigS-firma_M_contig8951:7..3961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004260.1
Hectar predicted targeting categoryother localisation
Exons7
Model size699
Cds size699
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828716.0489686-CDS-S-firma_M_contig8951:6..1221622828716.0489686-CDS-S-firma_M_contig8951:6..122Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 7..122 +
1697105119.0230062-CDS-S-firma_M_contig8951:6..1221697105119.0230062-CDS-S-firma_M_contig8951:6..122Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 7..122 +
1622828716.063886-CDS-S-firma_M_contig8951:642..7361622828716.063886-CDS-S-firma_M_contig8951:642..736Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 643..736 +
1697105119.033944-CDS-S-firma_M_contig8951:642..7361697105119.033944-CDS-S-firma_M_contig8951:642..736Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 643..736 +
1622828716.0776172-CDS-S-firma_M_contig8951:1147..12361622828716.0776172-CDS-S-firma_M_contig8951:1147..1236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 1148..1236 +
1697105119.0461094-CDS-S-firma_M_contig8951:1147..12361697105119.0461094-CDS-S-firma_M_contig8951:1147..1236Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 1148..1236 +
1622828716.092277-CDS-S-firma_M_contig8951:1734..18161622828716.092277-CDS-S-firma_M_contig8951:1734..1816Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 1735..1816 +
1697105119.0540793-CDS-S-firma_M_contig8951:1734..18161697105119.0540793-CDS-S-firma_M_contig8951:1734..1816Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 1735..1816 +
1622828716.1063461-CDS-S-firma_M_contig8951:2324..24591622828716.1063461-CDS-S-firma_M_contig8951:2324..2459Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 2325..2459 +
1697105119.0621536-CDS-S-firma_M_contig8951:2324..24591697105119.0621536-CDS-S-firma_M_contig8951:2324..2459Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 2325..2459 +
1622828716.1185195-CDS-S-firma_M_contig8951:2969..29991622828716.1185195-CDS-S-firma_M_contig8951:2969..2999Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 2970..2999 +
1697105119.070212-CDS-S-firma_M_contig8951:2969..29991697105119.070212-CDS-S-firma_M_contig8951:2969..2999Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 2970..2999 +
1622828716.130607-CDS-S-firma_M_contig8951:3808..39611622828716.130607-CDS-S-firma_M_contig8951:3808..3961Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 3809..3961 +
1697105119.0779517-CDS-S-firma_M_contig8951:3808..39611697105119.0779517-CDS-S-firma_M_contig8951:3808..3961Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig8951 3809..3961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8951.19854.1prot_S-firma_M_contig8951.19854.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig8951 7..3961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig8951.19854.1

>prot_S-firma_M_contig8951.19854.1 ID=prot_S-firma_M_contig8951.19854.1|Name=mRNA_S-firma_M_contig8951.19854.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=233bp
MGSARAAAAGAGAGTGWGASAGSKAVLSALRALQDKIRKLENERDRASVE
AGTLRRQIAALQTENDRTAQVQMAGLQEKTLASRLAYERLQADKIAADVS
RLRKAEEQKRLLGREATVAKERSAVAEEARRAAESRVSTLEDRLLSLGRE
EEKDSKAEAEAAEEATRTARSKANQIEALREKVARMEASVAAERTSREEA
EQGLERALSAKGKLERFLEGVLRVRKRERKGRG
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mRNA from alignment at S-firma_M_contig8951:7..3961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig8951.19854.1 ID=mRNA_S-firma_M_contig8951.19854.1|Name=mRNA_S-firma_M_contig8951.19854.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3955bp|location=Sequence derived from alignment at S-firma_M_contig8951:7..3961+ (Sphaerotrichia firma Sfir_13m male)
ATGGGGTCGGCGAGGGCGGCGGCGGCGGGGGCGGGGGCGGGGACGGGGTG
GGGGGCGAGCGCCGGGAGCAAGGCGGTGCTTTCGGCCCTCCGCGCCCTGC
AGGATAAGATTCGGAAGTGAGTGTGGAGGGGGCGGAGGGAGAGTTGGGCT
GTCTTGGGGGTTTGTCTTGCCGGACCGGGATTCTGTTCTCATATGCCTGG
TTGCTTCCCTTGCTGGGCGCCCGTCGCGGCGTGTTCGTGGTTTTTGGCGT
TTTAGCGTTTTGCGTGCTTGGTCGAACGGAACCCGGACCCCTTCCCAGCG
AGGGAGCGTTGCTTGAGTGAGTACCGGCGTCAGTCCGGCGCGTGCGTGCG
TATACATCTCCTGCCGCCCGATGGTCGCGGTGAGTGTACGTAGACGTTTG
TCGGTTTGTGCGCATGCAGACGTTTTTGAAAGAGGCCATGGTGGCTCCCC
TTTATGCTACCGCTGCTACTGCTGCTGCTGCTGCTGCTGATGATGATGAT
GATGATGATGATGATACCGCACTTGCTGCTAGCGGTGGTGCTTTATGTTG
TGGTTGCTGGTCGTGCCGGTGTTGCGGGCGAATAAGAAATACAACACGCA
CACACTACGCACTGTTTTTTTTTTTTCTACACACAGGCTTGAGAACGAGC
GCGATCGTGCTTCAGTGGAGGCCGGGACGCTGAGGAGACAGATTGCGGCG
TTGCAGACAGAGAACGACCGCACCGCCCAGGTCTGTAGCGTTGGTTTCGT
ATCCCTCGCTCCTTTGGCGGTGTAGCAGTACCGAACGGTGTCGAATGTGG
CGGTCGGGGAAAAGCTCCCCAACTGTTTCTCTGTGATTGCAGAAGGAATG
TGACTGCAGTTGCTGTTATTCCTACCGCGTTCGTGGTTTGTGGAAGTCGA
GTCTTCTTTGCAGCTTGGCCTGTTTTTTTTTCGTGCGTCGGAGTCGTCGT
CAATCTACGCCCCTTTCCGGGGTACATTCCGACACGCAGCAACCAGCAGA
AGCCATGCACAAAAATAACAACACCAACGATATAGCAGTAGCCATGCAGC
AACGGTGGTAGTGACAGCAGCGCCCCCCCGTGGCATTGCCCTCGTGCCCT
CAACCCCCCCGACACCGCTGCGCGCCCCGCCACAACAACAGGTGCAAATG
GCCGGGCTGCAAGAGAAAACGCTGGCGTCGCGGTTGGCTTACGAGAGACT
TCAAGCGGACAAGATTGCCGCCGACGTCAGGTAAGGGCCAGAGGGTTTGG
ATTCAAACACCCAGCCCTTTGCACTCTGCGGGAGTAGGCGTCTGAACCTG
GTCCGGAATACATGCAACCAACGCCAACAGCGTCCTACGGGACCCGCGTT
GAGTTGTTCGGGTGGGACAAGAAGAACCACGACCCAGCAGTGTAGGGACA
CAGGCAGCGCGCTCGCTGCTGGCATCGGAAGGACGTGTGCATGCAATGCT
GCTTGGCTGTCTTTTAGGTTGTTTGTCGGCGCGTTCTGTATGTGGGTGTG
AGACGTCTGTTTGACGCCTGCGCCATGTGCTACTCGGGTTTGCTGGCTCC
GTGTTGTGGTCTGCTTGCCGCAGTCGCTTGCGCACACACGCACGCGCATG
CCCGCATACCGTTTCTCCTTGTCGTGGCGGGCTTGATCTGTCCTGATGTT
TTCGTTTCGGTTCGGTTGGTGGATGTGATGTACACGTGTTTCTTGTCCCC
AACCCCATTCCCTCCGTCGGTCGCCAAGCAGGCTTCGCAAGGCGGAAGAG
CAGAAACGGCTGCTGGGGAGGGAAGCGACGGTTGCCAAGGAAAGATCGGC
AGTAGCAGAGGTAAGCGAGAGGCAAGGGGTTTACTCTAATCTATAGTAGC
AGGGATTGGCTTCGGTTGCTTTCTTGGGGGTTTGCAGTTGCGATGTCACG
TGTGAGTGTTTGCATAGACTACCCGTATCCGCGTGGAACAAACGGCAGTT
TTTTTTGTTTTCTGGGAACCGTGATTTCTGAAGCTTGCATTTCGTAGGTG
GCAAGCGCAGCAGCGGTTTTGCGGGGTTACGGCGTCGTGATGTGGGAAGG
ATGTCGGTAAGAAAGGAACACGACAAACAGAGAGGAACAGCAGTAGTAGT
AGTCGCCGTGAAACAGCGTTAATTTATCGCTTTATCGGTGATGACGACAA
AGCAACAAGAGACACGGGAATCCCGACCAACCTCTGATGTGACCGCTTAA
GAGTAGTCATTGCTCCCTTCAGCGCACACCAACGCACACCCACTCACACG
CGCGCTCGCACGCACACCCACACCCACACCCACACCCACACCCACACCCA
CACGCACAAAACACGCAGGAGGCCCGCCGGGCGGCGGAATCCCGCGTGTC
CACCCTAGAAGACCGGCTGTTGTCGCTCGGACGGGAGGAAGAGAAGGACA
GCAAGGCGGAGGCAGAGGCCGCAGAGGAGGCCACGAGGACGGCGAGGAGC
AAGGTGAGAAAAAGAAGAGATAAACGGGGGTGAAGCTTGGTGTAGAGCCA
GTCCTCTACAACGAGGAGCAAGGTGAAAAAAAGAGGAGACACGGGGGTGA
AGCTTGGCGTAGAGTCAGTCCTCTACAACGAGGAGCAAGGTGAAAAAAAG
AAGAGATAAACGGGGGTGAAGCTTGGTGTAGAGCCAGTCCTCCACAACAA
GAGCGCGAGAGCCGTTTCATCTTCTGCAGCGGTTTGTCTCGTCTCGACCG
CGAAAAAGTGTGCGTCGCTGTTGCAGCCGGGCCCGGTGACGCGAGAAAGG
TGCCCGATCAGAGAACGCCGAAACCTGCCCTCGCGAACGCGCACAAGGTA
AAGCAGTGCGCCCCCGCCCTGTTTTTGTTTCGGCTCGCCCGACCCTTTCG
CTTCCTCGTCGTCGTCGTCGTCGCCGTCGTCGTTGTTGCTACACCACGTT
CCGGTCGATGGCGAACCCTGCCGTATCCTTTCCTATCATATCCTGACCTA
ACGGCGGCGGCAGGCCAACCAGATCGAAGCCTTGCGAGAGAAGGTGAGCT
GCTTCTCCCCCCGGGGGGGGGGTCAGCCCCGCAAAGGGTGTGATGGTGGC
GTGGGTGTACTTGTCTTCTTCTGTTCCCTGTTATTTGTTATGTCGATCTT
CTGGCACAGCGTTGGACCCTTACCGTTTCGTGTCTTGCTGGCCGGGCGGT
CACGCTGGGAATTGAGCCCCCCCCCTCCCCGTGCGGGATATGCGGTCCGA
GAGCACTTTTTTCCGGTTATGTTTACACATGTGTGATGTTTGATGCTGAT
GCCGACTTAGGGCCGTTGGTGTTGGTGTTGGTGTTGCTGCCCCGCCAGGC
CGAGGGTGAGAGCAGGGAGGGAGGCGGATGGGGGAGAGAAGAGAAGGCCT
GACGACAACACCAATACGGAACGTTCGTGGAGACCTAGACTGATACCAAT
GACGCGCATCTCACGGAGAGACATCGTTGTTGTTATTAAAACAGAGTACA
CACGTCTATCCACGTGGTATCTACGTCTCGTGCGGGATTTTGCCCACTCT
AGCCAAGACCAGGGTGGTGGAAACTTTTTGCGACAAAAGCTTACACCTTA
CATACCTGCAGGTGGAGATGGTGCTTGAACACGGCCTGGTCCAAGCAGGC
TGCTGGGATGTGTTTCTTCCTCTTTTTCGCGCTCAACCCCGTTGCCATCG
ATCCACGACGCCGGCCTCACGAACGCCTTGCCTGGTACATAGATAGACCG
CGAGAATAGGAGAATAAGCACAGACTACGTAGCTTGAAGGCATCGAAGCG
TACACTGCCAACCCGCTTCTGCTACGGCGGCTGCGGCTGATGTTTGTCGT
AGGTGGCTCGCATGGAGGCGTCGGTCGCGGCGGAAAGGACGTCGAGGGAG
GAGGCGGAGCAGGGGCTGGAGCGAGCGCTCTCGGCGAAGGGAAAGCTGGA
GCGCTTCCTCGAGGGGGTTCTGAGGGTGAGAAAACGAGAAAGAAAGGGAC
GGGGA
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Coding sequence (CDS) from alignment at S-firma_M_contig8951:7..3961+

>mRNA_S-firma_M_contig8951.19854.1 ID=mRNA_S-firma_M_contig8951.19854.1|Name=mRNA_S-firma_M_contig8951.19854.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1398bp|location=Sequence derived from alignment at S-firma_M_contig8951:7..3961+ (Sphaerotrichia firma Sfir_13m male)
ATGGGGTCGGCGAGGGCGGCGGCGGCGGGGGCGGGGGCGGGGACGGGGTG
GGGGGCGAGCGCCGGGAGCAAGGCGGTGCTTTCGGCCCTCCGCGCCCTGC
AGGATAAGATTCGGAAATGGGGTCGGCGAGGGCGGCGGCGGCGGGGGCGG
GGGCGGGGACGGGGTGGGGGGCGAGCGCCGGGAGCAAGGCGGTGCTTTCG
GCCCTCCGCGCCCTGCAGGATAAGATTCGGAAGCTTGAGAACGAGCGCGA
TCGTGCTTCAGTGGAGGCCGGGACGCTGAGGAGACAGATTGCGGCGTTGC
AGACAGAGAACGACCGCACCGCCCAGGCTTGAGAACGAGCGCGATCGTGC
TTCAGTGGAGGCCGGGACGCTGAGGAGACAGATTGCGGCGTTGCAGACAG
AGAACGACCGCACCGCCCAGGTGCAAATGGCCGGGCTGCAAGAGAAAACG
CTGGCGTCGCGGTTGGCTTACGAGAGACTTCAAGCGGACAAGATTGCCGC
CGACGTCAGGTGCAAATGGCCGGGCTGCAAGAGAAAACGCTGGCGTCGCG
GTTGGCTTACGAGAGACTTCAAGCGGACAAGATTGCCGCCGACGTCAGCA
GGCTTCGCAAGGCGGAAGAGCAGAAACGGCTGCTGGGGAGGGAAGCGACG
GTTGCCAAGGAAAGATCGGCAGTAGCAGAGCAGGCTTCGCAAGGCGGAAG
AGCAGAAACGGCTGCTGGGGAGGGAAGCGACGGTTGCCAAGGAAAGATCG
GCAGTAGCAGAGGAGGCCCGCCGGGCGGCGGAATCCCGCGTGTCCACCCT
AGAAGACCGGCTGTTGTCGCTCGGACGGGAGGAAGAGAAGGACAGCAAGG
CGGAGGCAGAGGCCGCAGAGGAGGCCACGAGGACGGCGAGGAGCAAGGAG
GCCCGCCGGGCGGCGGAATCCCGCGTGTCCACCCTAGAAGACCGGCTGTT
GTCGCTCGGACGGGAGGAAGAGAAGGACAGCAAGGCGGAGGCAGAGGCCG
CAGAGGAGGCCACGAGGACGGCGAGGAGCAAGGCCAACCAGATCGAAGCC
TTGCGAGAGAAGGCCAACCAGATCGAAGCCTTGCGAGAGAAGGTGGCTCG
CATGGAGGCGTCGGTCGCGGCGGAAAGGACGTCGAGGGAGGAGGCGGAGC
AGGGGCTGGAGCGAGCGCTCTCGGCGAAGGGAAAGCTGGAGCGCTTCCTC
GAGGGGGTTCTGAGGGTGAGAAAACGAGAAAGAAAGGGACGGGGAGTGGC
TCGCATGGAGGCGTCGGTCGCGGCGGAAAGGACGTCGAGGGAGGAGGCGG
AGCAGGGGCTGGAGCGAGCGCTCTCGGCGAAGGGAAAGCTGGAGCGCTTC
CTCGAGGGGGTTCTGAGGGTGAGAAAACGAGAAAGAAAGGGACGGGGA
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