prot_S-firma_F_contig11101.1464.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig11101.1464.1
Unique Nameprot_S-firma_F_contig11101.1464.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length159
Homology
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BLAST of mRNA_S-firma_F_contig11101.1464.1 vs. uniprot
Match: A0A6H5L487_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L487_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.090e-17
Identity = 61/111 (54.95%), Postives = 68/111 (61.26%), Query Frame = 0 
Query:   46 RWHTSSFSRPSXXXXXXXXXXXXDFSLNDIERELKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGLEEGDAFMEEQMALRKTLLKAHVLVYNQGQPEEGVYTLFVQ 156
            R HTSSFSRPS            DFS ND+EREL R XXXXXXX                       S GL+EG+AFMEEQM LRK LLKA+V+V+NQG+ EEGVYTLFVQ
Sbjct:   43 RQHTSSFSRPSSADSGSGSG---DFSFNDLERELSRRXXXXXXXTGGPAASSRPPPAANATGAVY--SRGLDEGEAFMEEQMVLRKKLLKAYVVVFNQGELEEGVYTLFVQ 148
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11101.1464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L487_9PHAE1.090e-1754.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.544

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11101contigS-firma_F_contig11101:2412..4296 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11101.1464.1mRNA_S-firma_F_contig11101.1464.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig11101 2230..4631 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig11101.1464.1 ID=prot_S-firma_F_contig11101.1464.1|Name=mRNA_S-firma_F_contig11101.1464.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp
MRVATCCCCVLTSTLHVASTSLLRVSAFTPPPPSLFSSSGVSSPPRWHTS
SFSRPSSGDSSSNSNSSSDFSLNDIERELKRRRAEEAAGAKREAGAAADR
AAAAAAAVAAASSPGLEEGDAFMEEQMALRKTLLKAHVLVYNQGQPEEGV
YTLFVQVM*
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