prot_S-firma_F_contig11021.1372.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig11021.1372.1
Unique Nameprot_S-firma_F_contig11021.1372.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length52
Homology
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BLAST of mRNA_S-firma_F_contig11021.1372.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.890e-19
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0 
Query:    1 AEGVNIKRKSSQEAAERALWNLARKRREGFDKNLQIQVACEGLRVEVKRLK 51
            AE VN+KRK+SQEAAE+ LWNLARKR EGFDKN+QIQ+ACEGLR EVKRLK
Sbjct:  165 AERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11021.1372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE6.890e-1982.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 2..51
e-value: 2.9E-9
score: 36.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11021contigS-firma_F_contig11021:4564..4719 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11021.1372.1mRNA_S-firma_F_contig11021.1372.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig11021 4564..4719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig11021.1372.1 ID=prot_S-firma_F_contig11021.1372.1|Name=mRNA_S-firma_F_contig11021.1372.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=52bp
AEGVNIKRKSSQEAAERALWNLARKRREGFDKNLQIQVACEGLRVEVKRL
KT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27