mRNA_S-firma_F_contig11021.1372.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11021.1372.1
Unique NamemRNA_S-firma_F_contig11021.1372.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11021.1372.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.890e-19
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 AEGVNIKRKSSQEAAERALWNLARKRREGFDKNLQIQVACEGLRVEVKRLK 153
            AE VN+KRK+SQEAAE+ LWNLARKR EGFDKN+QIQ+ACEGLR EVKRLK
Sbjct:  165 AERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11021.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE6.890e-1982.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11021contigS-firma_F_contig11021:4564..4719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LQA4
Preferred nameBCAS2
PFAMsBCAS2
Max annot lvl2759|Eukaryota
KEGG koko:K12861,ko:K13336,ko:K20161
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG ModuleM00353,M00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
Evalue4.06e-20
EggNOG OGsKOG3096@1|root,KOG3096@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
DescriptionmRNA processing
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.6725156-CDS-S-firma_F_contig11021:4563..47191622815650.6725156-CDS-S-firma_F_contig11021:4563..4719Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11021 4564..4719 -
1696949479.1408863-CDS-S-firma_F_contig11021:4563..47191696949479.1408863-CDS-S-firma_F_contig11021:4563..4719Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11021 4564..4719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11021.1372.1prot_S-firma_F_contig11021.1372.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11021 4564..4719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11021.1372.1

>prot_S-firma_F_contig11021.1372.1 ID=prot_S-firma_F_contig11021.1372.1|Name=mRNA_S-firma_F_contig11021.1372.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=52bp
AEGVNIKRKSSQEAAERALWNLARKRREGFDKNLQIQVACEGLRVEVKRL
KT
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mRNA from alignment at S-firma_F_contig11021:4564..4719-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11021.1372.1 ID=mRNA_S-firma_F_contig11021.1372.1|Name=mRNA_S-firma_F_contig11021.1372.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=156bp|location=Sequence derived from alignment at S-firma_F_contig11021:4564..4719- (Sphaerotrichia firma ET2_F female)
GCGGAGGGCGTGAACATCAAGCGCAAGTCCTCCCAGGAGGCGGCCGAGAG
GGCCCTGTGGAACCTGGCCAGGAAGCGAAGAGAGGGTTTCGACAAGAACC
TGCAGATCCAGGTGGCGTGCGAGGGGCTGAGGGTGGAGGTCAAGCGGCTC
AAGACT
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Coding sequence (CDS) from alignment at S-firma_F_contig11021:4564..4719-

>mRNA_S-firma_F_contig11021.1372.1 ID=mRNA_S-firma_F_contig11021.1372.1|Name=mRNA_S-firma_F_contig11021.1372.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=312bp|location=Sequence derived from alignment at S-firma_F_contig11021:4564..4719- (Sphaerotrichia firma ET2_F female)
GCGGAGGGCGTGAACATCAAGCGCAAGTCCTCCCAGGAGGCGGCCGAGAG
GGCCCTGTGGAACCTGGCCAGGAAGCGAAGAGAGGGTTTCGACAAGAACC
TGCAGATCCAGGTGGCGTGCGAGGGGCTGAGGGTGGAGGTCAAGCGGCTC
AAGACTGCGGAGGGCGTGAACATCAAGCGCAAGTCCTCCCAGGAGGCGGC
CGAGAGGGCCCTGTGGAACCTGGCCAGGAAGCGAAGAGAGGGTTTCGACA
AGAACCTGCAGATCCAGGTGGCGTGCGAGGGGCTGAGGGTGGAGGTCAAG
CGGCTCAAGACT
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