prot_S-firma_F_contig11011.1359.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig11011.1359.1
Unique Nameprot_S-firma_F_contig11011.1359.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length275
Homology
BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.880e-60
Identity = 180/279 (64.52%), Postives = 193/279 (69.18%), Query Frame = 0
Query:    4 PASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX---------KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXXVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAXXXXXXXXXXXXXXXXXXXXXNSALFYNPFEDT-GPMDDDMDGSDSAXXXXXXXXXXXXDIDDLGGESGVCVAGGESXXXSAGPGPGAEIPARWAAGETGRVVARFSNPLQV 272
            PASPI  RFE+LAS+FLQP SSXXXXXXXXXXXXX         KSRKISLPKSIGRKI ASRSS  GVL R ++ SFSA            XXXXX     VCAVAHRAALTLEEQWETLSDMA CTSRL+ +DAARVQLSGIPRLESAR+LH  G LALLPGDGA    XXXXXXXXXXXXXXXX     FYNPFE+  G MDD  +  +              DID  G E G     G+     +G  PGAE+PARWAAGETGRVVARFSNPLQV
Sbjct:    2 PASPIQHRFETLASDFLQPASSXXXXXXXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVLGR-REASFSATGPPLLPIEAAGXXXXXS----VCAVAHRAALTLEEQWETLSDMALCTSRLSPEDAARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXX---XXFYNPFEEAVGGMDDXXESENGDG-----------DIDSHGEEGGRATQTGQGGGGDSGGRPGAELPARWAAGETGRVVARFSNPLQV 259          
BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.040e-28
Identity = 131/277 (47.29%), Postives = 140/277 (50.54%), Query Frame = 0
Query:    1 PTAPASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX----KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXX-VCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAXXXXXXXXXXXXXXXXXXXXXNSALFYNPFEDTGPMDDDMDGSDSAXXXXXXXXXXXXDIDDLGGESGVCVAGGESXXXSAGPGPGAEIPARWAAGETGRVVARFSNPLQV 272
            PT PASPI  RFE+LAS+FL P SS XXXXXXXXXXXX    KSRKISLPKSIGRKI ASRSS  GV+ R ++ SFSA           XXXXXXXXXXX VCAVAHRAALTLEEQWETLSDMA CTSRL+ +D ARVQ  G                    GD                                                                          GG+         PGAE+PARWAAGETGRVV RFSNPLQV
Sbjct:  682 PTMPASPIQHRFETLASDFLHPASSSXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVVGR-REASFSAMAPPLLPVEAAXXXXXXXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQGGG--------------------GDN-------------------------------------------------------------------------GGK---------PGAELPARWAAGETGRVVTRFSNPLQV 853          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI1.880e-6064.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE1.040e-2847.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11011contigS-firma_F_contig11011:481..4162 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11011.1359.1mRNA_S-firma_F_contig11011.1359.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig11011 481..4162 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig11011.1359.1 ID=prot_S-firma_F_contig11011.1359.1|Name=mRNA_S-firma_F_contig11011.1359.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=275bp
PTAPASPIHQRFESLASEFLQPGSSSSSSSAAATAAAKKSRKISLPKSIG
RKIHASRSSSSGVLSRSKDPSFSAAAPPPSSPEVGGGGGGGGGGGGVCAV
AHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFD
GPLALLPGDGAAAAAAAAAAAASTVSSSDAASNSALFYNPFEDTGPMDDD
MDGSDSAGDGGGGGGGGGGDIDDLGGESGVCVAGGESGGGSAGPGPGAEI
PARWAAGETGRVVARFSNPLQVKQ*
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