mRNA_S-firma_F_contig11011.1359.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11011.1359.1
Unique NamemRNA_S-firma_F_contig11011.1359.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.880e-60
Identity = 180/279 (64.52%), Postives = 193/279 (69.18%), Query Frame = 1 
Query:   10 PASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX---------KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXXVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAXXXXXXXXXXXXXXXXXXXXXNSALFYNPFEDT-GPMDDDMDGSDSAXXXXXXXXXXXXDIDDLGGESGVCVAGGESXXXSAGPGPGAEIPARWAAGETGRVVARFSNPLQV 816
            PASPI  RFE+LAS+FLQP SSXXXXXXXXXXXXX         KSRKISLPKSIGRKI ASRSS  GVL R ++ SFSA            XXXXX     VCAVAHRAALTLEEQWETLSDMA CTSRL+ +DAARVQLSGIPRLESAR+LH  G LALLPGDGA    XXXXXXXXXXXXXXXX     FYNPFE+  G MDD  +  +              DID  G E G     G+     +G  PGAE+PARWAAGETGRVVARFSNPLQV
Sbjct:    2 PASPIQHRFETLASDFLQPASSXXXXXXXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVLGR-REASFSATGPPLLPIEAAGXXXXXS----VCAVAHRAALTLEEQWETLSDMALCTSRLSPEDAARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXX---XXFYNPFEEAVGGMDDXXESENGDG-----------DIDSHGEEGGRATQTGQGGGGDSGGRPGAELPARWAAGETGRVVARFSNPLQV 259
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BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.040e-28
Identity = 131/277 (47.29%), Postives = 140/277 (50.54%), Query Frame = 1 
Query:    1 PTAPASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX----KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXX-VCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAXXXXXXXXXXXXXXXXXXXXXNSALFYNPFEDTGPMDDDMDGSDSAXXXXXXXXXXXXDIDDLGGESGVCVAGGESXXXSAGPGPGAEIPARWAAGETGRVVARFSNPLQV 816
            PT PASPI  RFE+LAS+FL P SS XXXXXXXXXXXX    KSRKISLPKSIGRKI ASRSS  GV+ R ++ SFSA           XXXXXXXXXXX VCAVAHRAALTLEEQWETLSDMA CTSRL+ +D ARVQ  G                    GD                                                                          GG+         PGAE+PARWAAGETGRVV RFSNPLQV
Sbjct:  682 PTMPASPIQHRFETLASDFLHPASSSXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVVGR-REASFSAMAPPLLPVEAAXXXXXXXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQGGG--------------------GDN-------------------------------------------------------------------------GGK---------PGAELPARWAAGETGRVVTRFSNPLQV 853
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11011.1359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI1.880e-6064.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE1.040e-2847.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11011contigS-firma_F_contig11011:481..4162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size827
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11011.1359.1prot_S-firma_F_contig11011.1359.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11011 481..4162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.500615-CDS-S-firma_F_contig11011:480..6091622815649.500615-CDS-S-firma_F_contig11011:480..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 481..609 -
1696949478.3883731-CDS-S-firma_F_contig11011:480..6091696949478.3883731-CDS-S-firma_F_contig11011:480..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 481..609 -
1622815649.5210972-CDS-S-firma_F_contig11011:1391..16851622815649.5210972-CDS-S-firma_F_contig11011:1391..1685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 1392..1685 -
1696949478.3965435-CDS-S-firma_F_contig11011:1391..16851696949478.3965435-CDS-S-firma_F_contig11011:1391..1685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 1392..1685 -
1622815649.5371296-CDS-S-firma_F_contig11011:2719..29801622815649.5371296-CDS-S-firma_F_contig11011:2719..2980Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 2720..2980 -
1696949478.4046628-CDS-S-firma_F_contig11011:2719..29801696949478.4046628-CDS-S-firma_F_contig11011:2719..2980Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 2720..2980 -
1622815649.5509946-CDS-S-firma_F_contig11011:4021..41621622815649.5509946-CDS-S-firma_F_contig11011:4021..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 4022..4162 -
1696949478.4129148-CDS-S-firma_F_contig11011:4021..41621696949478.4129148-CDS-S-firma_F_contig11011:4021..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11011 4022..4162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11011.1359.1

>prot_S-firma_F_contig11011.1359.1 ID=prot_S-firma_F_contig11011.1359.1|Name=mRNA_S-firma_F_contig11011.1359.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=275bp
PTAPASPIHQRFESLASEFLQPGSSSSSSSAAATAAAKKSRKISLPKSIG
RKIHASRSSSSGVLSRSKDPSFSAAAPPPSSPEVGGGGGGGGGGGGVCAV
AHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFD
GPLALLPGDGAAAAAAAAAAAASTVSSSDAASNSALFYNPFEDTGPMDDD
MDGSDSAGDGGGGGGGGGGDIDDLGGESGVCVAGGESGGGSAGPGPGAEI
PARWAAGETGRVVARFSNPLQVKQ*
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mRNA from alignment at S-firma_F_contig11011:481..4162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11011.1359.1 ID=mRNA_S-firma_F_contig11011.1359.1|Name=mRNA_S-firma_F_contig11011.1359.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3682bp|location=Sequence derived from alignment at S-firma_F_contig11011:481..4162- (Sphaerotrichia firma ET2_F female)
CCGACCGCGCCGGCCTCGCCGATCCACCAGCGCTTCGAGAGCCTGGCGTC
GGAGTTCCTGCAGCCGGGCTCGTCCTCCTCCTCCTCCTCCGCGGCCGCCA
CCGCCGCCGCGAAGAAGAGCCGCAAGATCTCCCTCCCGAAGGTGAGACTT
TACAACGGGGTTGATGTAGCAAGGTTTCCCTCCCGAAGGTGAGACGTTAC
AACGGGGTTGATATATATATAGAAGTATATATGTATAATACATTACTTCT
ATACGAAGTATAGATATATACTTCGAAGTATACCAGATTTTGGTTCCAGA
GAGGTGTGTGTTTTTTTCTGGTGGTGTGTGTGTTTAGTAGGGGTGTCAGG
TTGCCTGCCTTCCTTCCAAGGAGAGAGGCTACGGCTGGTCCTAGCGGGAG
GTTTGTGGAATCACTGACTCGTGGTGCGACAGATTTTGAACTGAACCGCC
ATGGGCTTTGTTCAATTCCGACGTTTTATTTTTATTTTTGGGAGGTTTGT
GGAATGACTATCTCGTTTTGCGAGAGATTTCGAACTGAACCGCCAACGGC
TTTGTTCAATTCCGACGATTTTTTTTTTCCTTGTTTGAAATCCCAGGGTT
GCGTGTAAAATAACAAGAATTTAGTAAAACGTAGTTTGGAGGGAAAACAA
GCTGCTCCCTCTGTCTCGCCCCATCTCCTGCGCGTGCGCTCTCTCCCCCT
CGTAACCCCCACCCACGTACACAGCCTCCGCTGTCCACTAACAACCCTCA
CCCCCGCAGCAGTAGGCTAGACGTAGTGCTGCATCGCGGAACGACCGCAT
GTCATCATCGTCCAACCTTCACCCAACCCTCCTTCAACGTATTCTCCTTC
TTGTTTCGTGTGTCGTTCGGCCACCACCGCCACCGCCACCACCACCACCA
CCACCAACGACAACAACAACAACAACAACAACAAAAACAACAACAACGAC
ACAACCACCAACACCAACACCACCACCACCGCCACCACCACCACCACCAC
CACTAACACCACCAACACCACCAACACCACCACCAACACCAACACCAACA
CCAACACCAACAACACCAACAACAACAACGACAACAACACCACCACCACC
ACCAACACCAACACCACCAACGCCACCAACGCCACCACCAACACCACCAA
CACCACCACCAACAACGACAACGACAACCCAGTCCATCGGCCGCAAGATC
CACGCCTCCCGCAGCAGCAGCAGCGGCGTCCTCAGCCGCAGCAAGGACCC
CTCCTTTTCCGCGGCCGCCCCGCCCCCGTCGTCGCCGGAGGTAGGAGGCG
GCGGCGGCGGCGGCGGCGGCGGGGGGGGAGTCTGTGCCGTGGCCCATCGG
GCGGCGCTGACGCTGGAGGAGCAGTGGGAGACGCTATCGGACATGGCCCA
GTGCACCTCACGGCTGACCGCACAGGACGCGGCGAGAGTCCAGGTATTGT
GTTGTACTTCGTTTATATTATATTGTGTTGTATTGCTATTTTATATTTAT
TGTATACTTCGTATTATGTTATTATTGTTTTATTTGCCATCCGACCCGAC
AATGCAGATGTTTCCAACAAAATCTTAAACTTTACCTGTCGTACTCCTGT
TGTATTGTACCAGTAGTGTGTTGTGTTGTATTGTAGACAAGTGCGTTTTT
GGCTCTCGTGGTACATGATCGTAGTGATTTTTTTGTTTTTTATGTCCGAA
GTTGATCAGATGGAGAACGAACAAAAGCGGCGAGGGTTCGGGTGAACAAT
AAGAAGAAATCAGGAAAATGTACGTTTATGGGTTGATTTTTTTTAATGGG
ATCGGGAACGACCGTCCACCCAAGAAAGAGACGAGAGGGAGGCTCGCGGT
GAAGCAGGCGACGGCATTGTTGAAGAGCAGCTTGCCAACCACGCGTTCTC
TTTCGTGTGACCTAGATAGACGCTCGCGCCCCCGAACCGAAAACTAAACC
AGTCGAGCCACCAGTGATCGAAACGAAAAGAAAATCGCAACAACACGTCG
AGAGCATGAACACACCTACCTCAAACACGTGGCTTCTGCCTTTGATGATT
GGTCTGTCCTGGCTGCTTCTCCCTTTTTTTTGTTCCTTGTTCCATCCCGA
AGCGAAACACACACACACACACACACACACACACGCAAAAAAAATGAGGG
TTAGTGGTGTCTACAGAAAGCCCCCCTGGAACGACTCATTCACGGGACGG
ACGGACGGACGTCTACGGCTGACGCGTAACACGTAGAAAACTTACCTACC
AAAAATCTCACCCGTGACACAACCGTAAACAACGAAACAAACCGACACAA
CACAACACAACACAGCTTTCGGGCATCCCCCCGCCTGGTACAAAACTTGT
TCAAAATCAAACCCGTGCGTGACACAACCGAAACAACGAAACAACCACGT
AGAAGACTTGATTCAAAATCGAACCCGTACAAACAACGTGACGACGAAAC
AAACCGACACAACGCAACACAACGCAGCTGTCGGGCATCCCCCGCCTGGA
GTCGGCGCGAATCCTCCACTTCGACGGGCCCCTGGCGCTCCTGCCGGGGG
ACGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCTACGGTC
TCCTCCTCCGACGCCGCGAGCAACAGCGCCCTCTTCTACAACCCCTTCGA
GGACACCGGCCCGATGGACGACGACATGGACGGCTCCGATAGCGCCGGGG
ACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGACATCGATGACCTCGGG
GGGGAATCAGGTGTGTGTGTGGTGTGTGCGTGTGTGTGTGTGTGTGTGTG
TGGTGTGTGTGTGTATGTGTTTTGTTTGCGTGCGCGCCGTGATGAAGTTT
ACGCGTCATTTCCTGTCCATTTTTTGTGTTCTCTTCTCCCCCATCCCCGT
CTCTCCCGCCCCCCGTCTCTCCCGCCCCTGGTTGTCGAACCCCAACCCCG
ATGCATTCATTCCTTTGGGTGGGGCCGACGAGACCCACACCAGACATAGA
CATAGACATCGACATCGACATAGACACAGACATCGACATAGACATAGACA
TCGACATTGACGGACTGCGCGACAGATGGATAGCACGGCACACGAGTGTT
TTTTTTTTTTTTTTTTGGGGGGTGGTAGTGCCAAAGTGGAGCCAACTCCC
CCCCCCCCCGTGTTTATTATCTTCTACACCAACCTAATTATTCCTCTCAA
GAAACCAAATTTTCTTCACNNNNNNNNNNCATGCCTTTCTTTGTTGGGGG
CGGGACCAGACACAAAACACACAAAATAAAAAAAAACAAAAAAACAAAAA
TAGAGAAACTGAGAGAAAAATGAATAGAACGGCACACGAGTGTTTTTTTT
TTTTTTTTTGGGGGGGTGGTAGTGCCAAAGTGCAGCCAACTCCCCCCCCC
CGCGCTTCGCCTCCTCGAGAGCCCCCCTTGTCTATCCGCCGTAAACGACA
AACTTTACTCAACCCCAAGGCAAGCCGAGCACCAAGTACGCCCCCCTCGC
CTTTTGCTCGTCGAACGCGGACACCAATAGGCCGTAGGTCGGCCGGCCAC
CAGGCGGGGGGCGAGAGCGGGGGCGGGAGTGCGGGGCCAGGACCGGGGGC
GGAGATTCCTGCCCGCTGGGCCGCCGGGGAGACCGGCAGGGTCGTCGCCA
GGTTCTCCAACCCGCTGCAGGTGAAACAATAA
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Coding sequence (CDS) from alignment at S-firma_F_contig11011:481..4162-

>mRNA_S-firma_F_contig11011.1359.1 ID=mRNA_S-firma_F_contig11011.1359.1|Name=mRNA_S-firma_F_contig11011.1359.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1650bp|location=Sequence derived from alignment at S-firma_F_contig11011:481..4162- (Sphaerotrichia firma ET2_F female)
CCGACCGCGCCGGCCTCGCCGATCCACCAGCGCTTCGAGAGCCTGGCGTC
GGAGTTCCTGCAGCCGGGCTCGTCCTCCTCCTCCTCCTCCGCGGCCGCCA
CCGCCGCCGCGAAGAAGAGCCGCAAGATCTCCCTCCCGAAGCCGACCGCG
CCGGCCTCGCCGATCCACCAGCGCTTCGAGAGCCTGGCGTCGGAGTTCCT
GCAGCCGGGCTCGTCCTCCTCCTCCTCCTCCGCGGCCGCCACCGCCGCCG
CGAAGAAGAGCCGCAAGATCTCCCTCCCGAAGTCCATCGGCCGCAAGATC
CACGCCTCCCGCAGCAGCAGCAGCGGCGTCCTCAGCCGCAGCAAGGACCC
CTCCTTTTCCGCGGCCGCCCCGCCCCCGTCGTCGCCGGAGGTAGGAGGCG
GCGGCGGCGGCGGCGGCGGCGGGGGGGGAGTCTGTGCCGTGGCCCATCGG
GCGGCGCTGACGCTGGAGGAGCAGTGGGAGACGCTATCGGACATGGCCCA
GTGCACCTCACGGCTGACCGCACAGGACGCGGCGAGAGTCCAGTCCATCG
GCCGCAAGATCCACGCCTCCCGCAGCAGCAGCAGCGGCGTCCTCAGCCGC
AGCAAGGACCCCTCCTTTTCCGCGGCCGCCCCGCCCCCGTCGTCGCCGGA
GGTAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGGAGTCTGTGCCG
TGGCCCATCGGGCGGCGCTGACGCTGGAGGAGCAGTGGGAGACGCTATCG
GACATGGCCCAGTGCACCTCACGGCTGACCGCACAGGACGCGGCGAGAGT
CCAGCTGTCGGGCATCCCCCGCCTGGAGTCGGCGCGAATCCTCCACTTCG
ACGGGCCCCTGGCGCTCCTGCCGGGGGACGGGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGTCTACGGTCTCCTCCTCCGACGCCGCGAGCAA
CAGCGCCCTCTTCTACAACCCCTTCGAGGACACCGGCCCGATGGACGACG
ACATGGACGGCTCCGATAGCGCCGGGGACGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGGGACATCGATGACCTCGGGGGGGAATCAGGTGTGTGTGTGCT
GTCGGGCATCCCCCGCCTGGAGTCGGCGCGAATCCTCCACTTCGACGGGC
CCCTGGCGCTCCTGCCGGGGGACGGGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGTCTACGGTCTCCTCCTCCGACGCCGCGAGCAACAGCGC
CCTCTTCTACAACCCCTTCGAGGACACCGGCCCGATGGACGACGACATGG
ACGGCTCCGATAGCGCCGGGGACGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGGGACATCGATGACCTCGGGGGGGAATCAGGTGTGTGTGTGGCGGGGGG
CGAGAGCGGGGGCGGGAGTGCGGGGCCAGGACCGGGGGCGGAGATTCCTG
CCCGCTGGGCCGCCGGGGAGACCGGCAGGGTCGTCGCCAGGTTCTCCAAC
CCGCTGCAGGTGAAACAATAAGCGGGGGGCGAGAGCGGGGGCGGGAGTGC
GGGGCCAGGACCGGGGGCGGAGATTCCTGCCCGCTGGGCCGCCGGGGAGA
CCGGCAGGGTCGTCGCCAGGTTCTCCAACCCGCTGCAGGTGAAACAATAA
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