prot_S-firma_F_contig10993.1309.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10993.1309.1
Unique Nameprot_S-firma_F_contig10993.1309.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length113
Homology
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BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.280e-44
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 0 
Query:   30 RAAAWAGCQAAGIEIVEDRFAGAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKGCFLAQWDNPEVRDADFIFFNNSSGWF 113
            +AAAWAGCQAAGIEIVEDRFAGAVELHSAF+K VFAE +  A++HP VV+Q+VHLFKGCFL QW+NPEVRDADFIFFNNSSGWF
Sbjct:   26 QAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKGCFLEQWENPEVRDADFIFFNNSSGWF 109
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BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.490e-20
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   30 RAAAWAGCQAAGIEIVEDRFAGAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKG 87
            +AAAWAGCQAAGIEIVEDRFAGAVELHSAF+K VFAE +  A++HP VV+Q+VHLFK 
Sbjct:  628 QAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKS 685
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPQ4_9PHAE1.280e-4483.33RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU81_ECTSI2.490e-2077.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 27..112
e-value: 5.5E-7
score: 31.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10993contigS-firma_F_contig10993:793..1606 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10993.1309.1mRNA_S-firma_F_contig10993.1309.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10993 792..1606 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10993.1309.1 ID=prot_S-firma_F_contig10993.1309.1|Name=mRNA_S-firma_F_contig10993.1309.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=113bp
RGRSGSDVPQQQSHVGAQVLGHWLRHRLYRAAAWAGCQAAGIEIVEDRFA
GAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKGCFLAQWDNPEVRD
ADFIFFNNSSGWF
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