mRNA_S-firma_F_contig10993.1309.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10993.1309.1
Unique NamemRNA_S-firma_F_contig10993.1309.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.280e-44
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:   88 RAAAWAGCQAAGIEIVEDRFAGAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKGCFLAQWDNPEVRDADFIFFNNSSGWF 339
            +AAAWAGCQAAGIEIVEDRFAGAVELHSAF+K VFAE +  A++HP VV+Q+VHLFKGCFL QW+NPEVRDADFIFFNNSSGWF
Sbjct:   26 QAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKGCFLEQWENPEVRDADFIFFNNSSGWF 109
[Close]
BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.490e-20
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   88 RAAAWAGCQAAGIEIVEDRFAGAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKG 261
            +AAAWAGCQAAGIEIVEDRFAGAVELHSAF+K VFAE +  A++HP VV+Q+VHLFK 
Sbjct:  628 QAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKS 685
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10993.1309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPQ4_9PHAE1.280e-4483.33RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU81_ECTSI2.490e-2077.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10993contigS-firma_F_contig10993:792..1606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size340
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10993.1309.1prot_S-firma_F_contig10993.1309.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10993 793..1606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.9698033-CDS-S-firma_F_contig10993:792..8731622815643.9698033-CDS-S-firma_F_contig10993:792..873Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 793..873 -
1696949474.6417053-CDS-S-firma_F_contig10993:792..8731696949474.6417053-CDS-S-firma_F_contig10993:792..873Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 793..873 -
1622815643.9811766-CDS-S-firma_F_contig10993:1127..12651622815643.9811766-CDS-S-firma_F_contig10993:1127..1265Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 1128..1265 -
1696949474.6516645-CDS-S-firma_F_contig10993:1127..12651696949474.6516645-CDS-S-firma_F_contig10993:1127..1265Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 1128..1265 -
1622815643.9942663-CDS-S-firma_F_contig10993:1486..16061622815643.9942663-CDS-S-firma_F_contig10993:1486..1606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 1487..1606 -
1696949474.6602757-CDS-S-firma_F_contig10993:1486..16061696949474.6602757-CDS-S-firma_F_contig10993:1486..1606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10993 1487..1606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10993.1309.1

>prot_S-firma_F_contig10993.1309.1 ID=prot_S-firma_F_contig10993.1309.1|Name=mRNA_S-firma_F_contig10993.1309.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=113bp
RGRSGSDVPQQQSHVGAQVLGHWLRHRLYRAAAWAGCQAAGIEIVEDRFA
GAVELHSAFKKTVFAEEEFQAVMHPTVVDQQVHLFKGCFLAQWDNPEVRD
ADFIFFNNSSGWF
back to top

mRNA from alignment at S-firma_F_contig10993:792..1606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10993.1309.1 ID=mRNA_S-firma_F_contig10993.1309.1|Name=mRNA_S-firma_F_contig10993.1309.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=815bp|location=Sequence derived from alignment at S-firma_F_contig10993:792..1606- (Sphaerotrichia firma ET2_F female)
CGAGGCCGCAGTGGATCAGATGTTCCGCAACAGCAATCTCACGTCGGAGC
ACAGGTTCTTGGACATTGGCTGCGGCATAGGCTCTATCGTGCTGCTGCGT
GGGCCGGCTGCCAGGCAGCGGTGATTTTCTACGTCATTATTTGCTCGAAA
TATCAGGAGTCTTGTGCCTATGTCTGCTGCCCCCCCCTTTTTTTTTCCCT
TCTTTTTTCCCGGTGACTGTTGTTGTAGACACACCCGCCTAACCGCCCCC
TGCTAGGTGGCATAACATACATGCAAGCCGACAATGCCTTCCAGTTTGTA
TGCACAACAAACGGTTTTGTACGCTGGTGCTAATAATGCAGGGTATCGAG
ATCGTGGAGGACAGATTCGCAGGGGCCGTGGAGCTGCACTCGGCCTTCAA
GAAGACGGTCTTCGCAGAAGAGGAGTTCCAGGCCGTCATGCACCCAACCG
TGGTGGACCAGCAGGTTCACCTCTTCAAGGTGCGTAGCGCTGGATGGATG
TACTATACAAGGTGCCCTGATGGAGTTACAGCAGGCTCGAGCGGGGGCCC
GTAGTGTATGCCAGATGGCCTGCTGGAGGTATTGCAGGCAGTCCTTGCAG
TCTTCCTTCTCTTGTATGTACCACGATTGATGCACATACAGAGTATGTCT
TGTTTTGACACGACCGTTTTACTTCTGTTGGCTTCGGGTTTTACCCTTGT
TCCTGTTTCGTTTGCGTGTTGCGTGACAAGAAGGGCTGCTTCTTGGCGCA
GTGGGACAACCCGGAGGTCCGGGACGCTGACTTCATCTTCTTCAACAACA
GCAGCGGCTGGTTCA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10993:792..1606-

>mRNA_S-firma_F_contig10993.1309.1 ID=mRNA_S-firma_F_contig10993.1309.1|Name=mRNA_S-firma_F_contig10993.1309.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=678bp|location=Sequence derived from alignment at S-firma_F_contig10993:792..1606- (Sphaerotrichia firma ET2_F female)
CGAGGCCGCAGTGGATCAGATGTTCCGCAACAGCAATCTCACGTCGGAGC
ACAGGTTCTTGGACATTGGCTGCGGCATAGGCTCTATCGTGCTGCTGCGT
GGGCCGGCTGCCAGGCAGCGCGAGGCCGCAGTGGATCAGATGTTCCGCAA
CAGCAATCTCACGTCGGAGCACAGGTTCTTGGACATTGGCTGCGGCATAG
GCTCTATCGTGCTGCTGCGTGGGCCGGCTGCCAGGCAGCGGGTATCGAGA
TCGTGGAGGACAGATTCGCAGGGGCCGTGGAGCTGCACTCGGCCTTCAAG
AAGACGGTCTTCGCAGAAGAGGAGTTCCAGGCCGTCATGCACCCAACCGT
GGTGGACCAGCAGGTTCACCTCTTCAAGGGTATCGAGATCGTGGAGGACA
GATTCGCAGGGGCCGTGGAGCTGCACTCGGCCTTCAAGAAGACGGTCTTC
GCAGAAGAGGAGTTCCAGGCCGTCATGCACCCAACCGTGGTGGACCAGCA
GGTTCACCTCTTCAAGGGCTGCTTCTTGGCGCAGTGGGACAACCCGGAGG
TCCGGGACGCTGACTTCATCTTCTTCAACAACAGCAGCGGCTGGTTCGGC
TGCTTCTTGGCGCAGTGGGACAACCCGGAGGTCCGGGACGCTGACTTCAT
CTTCTTCAACAACAGCAGCGGCTGGTTC
back to top