prot_S-firma_F_contig10962.1277.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10962.1277.1
Unique Nameprot_S-firma_F_contig10962.1277.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length53
Homology
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: A0A6M0RNU0_9CYAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Leptolyngbyaceae cyanobacterium CCMR0081 TaxID=2292702 RepID=A0A6M0RNU0_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 6.090e-6
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:    9 NHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGP 50
            +HP  A +LNNLGGLY+ + R+E+AE  Y  +  ++ + LGP
Sbjct:    2 DHPSTARSLNNLGGLYRTMGRYEDAEPLYQRSLAIYEAQLGP 43
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: X1HCV2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1HCV2_9ZZZZ)

HSP 1 Score: 48.1 bits (113), Expect = 4.360e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:   11 PDVAGTLNNLGGLYKELRRFEEAEASYVEAARV 43
            PDVA T NNLGGLY +L RFEEAE +Y EA  +
Sbjct:   11 PDVAMTQNNLGGLYTDLGRFEEAETAYTEALDI 43
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: A0A816BAU4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816BAU4_ADIRI)

HSP 1 Score: 45.4 bits (106), Expect = 7.830e-5
Identity = 20/49 (40.82%), Postives = 27/49 (55.10%), Query Frame = 0 
Query:    5 SLPANHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGPSHP 53
            SLP NHPDVAG+ NN+G  Y+ +     A   Y  A ++    L  +HP
Sbjct:   21 SLPTNHPDVAGSYNNIGNAYRNMGDRRTALLFYTNAVQIARKVLPSTHP 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6M0RNU0_9CYAN6.090e-645.24Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
X1HCV2_9ZZZZ4.360e-566.67Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A816BAU4_ADIRI7.830e-540.82Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..53
e-value: 6.5E-14
score: 53.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 8..49
NoneNo IPR availablePFAMPF13374TPR_10coord: 13..53
e-value: 1.2E-8
score: 34.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10962contigS-firma_F_contig10962:4403..4794 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10962.1277.1mRNA_S-firma_F_contig10962.1277.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10962 4403..4794 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10962.1277.1 ID=prot_S-firma_F_contig10962.1277.1|Name=mRNA_S-firma_F_contig10962.1277.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=53bp
MMRVSLPANHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGP
SHP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf