mRNA_S-firma_F_contig10962.1277.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10962.1277.1
Unique NamemRNA_S-firma_F_contig10962.1277.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: A0A6M0RNU0_9CYAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Leptolyngbyaceae cyanobacterium CCMR0081 TaxID=2292702 RepID=A0A6M0RNU0_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 6.090e-6
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   25 NHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGP 150
            +HP  A +LNNLGGLY+ + R+E+AE  Y  +  ++ + LGP
Sbjct:    2 DHPSTARSLNNLGGLYRTMGRYEDAEPLYQRSLAIYEAQLGP 43
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: X1HCV2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1HCV2_9ZZZZ)

HSP 1 Score: 48.1 bits (113), Expect = 4.360e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   31 PDVAGTLNNLGGLYKELRRFEEAEASYVEAARV 129
            PDVA T NNLGGLY +L RFEEAE +Y EA  +
Sbjct:   11 PDVAMTQNNLGGLYTDLGRFEEAETAYTEALDI 43
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BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Match: A0A816BAU4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816BAU4_ADIRI)

HSP 1 Score: 45.4 bits (106), Expect = 7.830e-5
Identity = 20/49 (40.82%), Postives = 27/49 (55.10%), Query Frame = 1 
Query:   13 SLPANHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGPSHP 159
            SLP NHPDVAG+ NN+G  Y+ +     A   Y  A ++    L  +HP
Sbjct:   21 SLPTNHPDVAGSYNNIGNAYRNMGDRRTALLFYTNAVQIARKVLPSTHP 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10962.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6M0RNU0_9CYAN6.090e-645.24Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
X1HCV2_9ZZZZ4.360e-566.67Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A816BAU4_ADIRI7.830e-540.82Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10962contigS-firma_F_contig10962:4403..4794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1121396.KB893072_gene1254
PFAMsNB-ARC,Peptidase_C14,TIR_2,TPR_10,TPR_12,TPR_7,TPR_8
Max annot lvl2|Bacteria
Evalue2.61e-06
EggNOG OGsCOG0457@1|root,COG3903@1|root,COG0457@2|Bacteria,COG3903@2|Bacteria
DescriptionADP binding
COG categoryK
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.871514-CDS-S-firma_F_contig10962:4402..44441622815640.871514-CDS-S-firma_F_contig10962:4402..4444Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10962 4403..4444 -
1696949472.5547512-CDS-S-firma_F_contig10962:4402..44441696949472.5547512-CDS-S-firma_F_contig10962:4402..4444Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10962 4403..4444 -
1622815640.884394-CDS-S-firma_F_contig10962:4677..47941622815640.884394-CDS-S-firma_F_contig10962:4677..4794Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10962 4678..4794 -
1696949472.566609-CDS-S-firma_F_contig10962:4677..47941696949472.566609-CDS-S-firma_F_contig10962:4677..4794Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10962 4678..4794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10962.1277.1prot_S-firma_F_contig10962.1277.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10962 4403..4794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10962.1277.1

>prot_S-firma_F_contig10962.1277.1 ID=prot_S-firma_F_contig10962.1277.1|Name=mRNA_S-firma_F_contig10962.1277.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=53bp
MMRVSLPANHPDVAGTLNNLGGLYKELRRFEEAEASYVEAARVFSSSLGP
SHP
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mRNA from alignment at S-firma_F_contig10962:4403..4794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10962.1277.1 ID=mRNA_S-firma_F_contig10962.1277.1|Name=mRNA_S-firma_F_contig10962.1277.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=392bp|location=Sequence derived from alignment at S-firma_F_contig10962:4403..4794- (Sphaerotrichia firma ET2_F female)
ATGATGCGTGTGTCGCTGCCGGCGAACCATCCTGATGTGGCGGGGACACT
GAACAACTTGGGTGGTCTGTACAAGGAGCTTCGGCGGTTTGAGGAGGCGG
AGGCGTCGTACGTGGAGGTGAGGGCAGCTGTGTTGTGGGAGTGTGTGGGA
GTGTGTGGTGTTGTGGTTGCCGTTGTTATTGTGACGCTGATGCTGTGTGT
GTGTGTGTGTGTTTGTGTGTGCAGGCATTGGGGATGATGCGTTTGTCGCT
GCCGGCAAACCATCCGCACGTTGGAACTGTGCTGTTTGGTCTCGGTCAGG
TGCTCCTCCAGTCTGGAAGGATCCAAGCGGGGACCAATCGGCTCACGGAG
GCAGCCCGTGTGTTTTCATCAAGTCTTGGACCTTCGCACCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10962:4403..4794-

>mRNA_S-firma_F_contig10962.1277.1 ID=mRNA_S-firma_F_contig10962.1277.1|Name=mRNA_S-firma_F_contig10962.1277.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=318bp|location=Sequence derived from alignment at S-firma_F_contig10962:4403..4794- (Sphaerotrichia firma ET2_F female)
ATGATGCGTGTGTCGCTGCCGGCGAACCATCCTGATGTGGCGGGGACACT
GAACAACTTGGGTGGTCTGTACAAGGAGCTTCGGCGGTTTGAGGAGGCGG
AGGCGTCGTACGTGGAGATGATGCGTGTGTCGCTGCCGGCGAACCATCCT
GATGTGGCGGGGACACTGAACAACTTGGGTGGTCTGTACAAGGAGCTTCG
GCGGTTTGAGGAGGCGGAGGCGTCGTACGTGGAGGCAGCCCGTGTGTTTT
CATCAAGTCTTGGACCTTCGCACCCGGCAGCCCGTGTGTTTTCATCAAGT
CTTGGACCTTCGCACCCG
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