prot_S-firma_F_contig1096.1274.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1096.1274.1
Unique Nameprot_S-firma_F_contig1096.1274.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length111
Homology
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BLAST of mRNA_S-firma_F_contig1096.1274.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.850e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0 
Query:    5 AELCAEHARNGMVNVVSKRCGHIGCNKIPSYGKAG 39
            AE C++H +  MVNVVSKRCGH GC K PSYG+AG
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAG 56
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1096.1274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE4.850e-868.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1096contigS-firma_F_contig1096:13249..13581 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1096.1274.1mRNA_S-firma_F_contig1096.1274.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1096 13249..13581 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1096.1274.1 ID=prot_S-firma_F_contig1096.1274.1|Name=mRNA_S-firma_F_contig1096.1274.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
GTTKAELCAEHARNGMVNVVSKRCGHIGCNKIPSYGKAGTTKAELCAEHA
RNGMVNVRDKRCGHIGCSKHPSFCTTGGSHRKEFRSQHSKEGMTILRTGR
SRGMGRTTSGH
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