mRNA_S-firma_F_contig1096.1274.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1096.1274.1
Unique NamemRNA_S-firma_F_contig1096.1274.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1096.1274.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.850e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   13 AELCAEHARNGMVNVVSKRCGHIGCNKIPSYGKAG 117
            AE C++H +  MVNVVSKRCGH GC K PSYG+AG
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAG 56
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1096.1274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE4.850e-868.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1096contigS-firma_F_contig1096:13249..13581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FHY3
Max annot lvl2880.D7FHY3|-
Evalue1.16e-07
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6926057-CDS-S-firma_F_contig1096:13248..135811622815640.6926057-CDS-S-firma_F_contig1096:13248..13581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 13249..13581 +
1696949472.4895403-CDS-S-firma_F_contig1096:13248..135811696949472.4895403-CDS-S-firma_F_contig1096:13248..13581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1096 13249..13581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1096.1274.1prot_S-firma_F_contig1096.1274.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1096 13249..13581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1096.1274.1

>prot_S-firma_F_contig1096.1274.1 ID=prot_S-firma_F_contig1096.1274.1|Name=mRNA_S-firma_F_contig1096.1274.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
GTTKAELCAEHARNGMVNVVSKRCGHIGCNKIPSYGKAGTTKAELCAEHA
RNGMVNVRDKRCGHIGCSKHPSFCTTGGSHRKEFRSQHSKEGMTILRTGR
SRGMGRTTSGH
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mRNA from alignment at S-firma_F_contig1096:13249..13581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1096.1274.1 ID=mRNA_S-firma_F_contig1096.1274.1|Name=mRNA_S-firma_F_contig1096.1274.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=333bp|location=Sequence derived from alignment at S-firma_F_contig1096:13249..13581+ (Sphaerotrichia firma ET2_F female)
GGCACCACCAAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGCATGGT
GAACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGCAACAAGATCCCAT
CGTACGGCAAGGCTGGCACCACCAAGGCGGAGCTCTGCGCTGAACACGCT
CGGAACGGCATGGTGAACGTCCGCGACAAGAGGTGTGGCCACATCGGGTG
CAGCAAGCATCCATCATTTTGCACTACTGGAGGGAGTCACAGAAAAGAGT
TTCGTTCCCAACATTCCAAGGAAGGTATGACAATCCTGAGAACCGGCCGA
TCTCGTGGGATGGGAAGGACCACCAGCGGGCAT
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Coding sequence (CDS) from alignment at S-firma_F_contig1096:13249..13581+

>mRNA_S-firma_F_contig1096.1274.1 ID=mRNA_S-firma_F_contig1096.1274.1|Name=mRNA_S-firma_F_contig1096.1274.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_F_contig1096:13249..13581+ (Sphaerotrichia firma ET2_F female)
GGCACCACCAAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGCATGGT
GAACGTCGTCAGCAAGAGGTGTGGCCACATCGGGTGCAACAAGATCCCAT
CGTACGGCAAGGCTGGCACCACCAAGGCGGAGCTCTGCGCTGAACACGCT
CGGAACGGCATGGTGAACGTCCGCGACAAGAGGTGTGGCCACATCGGGTG
CAGCAAGCATCCATCATTTTGCACTACTGGAGGGAGTCACAGAAAAGAGT
TTCGTTCCCAACATTCCAAGGAAGGTATGACAATCCTGAGAACCGGCCGA
TCTCGTGGGATGGGAAGGACCACCAGCGGGCATGGCACCACCAAGGCGGA
GCTCTGCGCTGAACACGCTCGGAACGGCATGGTGAACGTCGTCAGCAAGA
GGTGTGGCCACATCGGGTGCAACAAGATCCCATCGTACGGCAAGGCTGGC
ACCACCAAGGCGGAGCTCTGCGCTGAACACGCTCGGAACGGCATGGTGAA
CGTCCGCGACAAGAGGTGTGGCCACATCGGGTGCAGCAAGCATCCATCAT
TTTGCACTACTGGAGGGAGTCACAGAAAAGAGTTTCGTTCCCAACATTCC
AAGGAAGGTATGACAATCCTGAGAACCGGCCGATCTCGTGGGATGGGAAG
GACCACCAGCGGGCAT
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