prot_S-firma_F_contig10949.1258.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10949.1258.1
Unique Nameprot_S-firma_F_contig10949.1258.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length174
Homology
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BLAST of mRNA_S-firma_F_contig10949.1258.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.330e-13
Identity = 64/168 (38.10%), Postives = 84/168 (50.00%), Query Frame = 0 
Query:   16 MAQRELQGRLQLAEQQVRMYREAMKHLIAAPATNPSKPQLPPAVHPSTSATEAAAVAGRS----ESFPKIXXXXXXXXXXXXXXXXG-----DTAGGEAEAAGSVKGDKDGCPTLGEAGSRPAKECWNGDAGGEGAGFRTAETSGSATSTDKGPNIWGLIGGVVGRIG 174
            MA RELQGRLQLAEQQVRMYREAM+HLIAAP+          A +P+ S + A+ ++  +    E+  KI                       T G +AEA    +GD D     G  G++      + D          AE+S  +T+ +KGP+IWG IGG VG IG
Sbjct:    1 MAYRELQGRLQLAEQQVRMYREAMEHLIAAPS----------AAYPAASQSRASPISTTAGVAQENLSKIFAGGENDPDNTKPAPGAIPDVATTGGAKAEAV--AEGDDDSVSDHGRGGTKKEVPRLSSD------DAEGAESSAGSTAAEKGPSIWGFIGGAVGWIG 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10949.1258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE2.330e-1338.10APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10949contigS-firma_F_contig10949:61..1901 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10949.1258.1mRNA_S-firma_F_contig10949.1258.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10949 60..1901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10949.1258.1 ID=prot_S-firma_F_contig10949.1258.1|Name=mRNA_S-firma_F_contig10949.1258.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=174bp
CRRQTTATTARQPPAMAQRELQGRLQLAEQQVRMYREAMKHLIAAPATNP
SKPQLPPAVHPSTSATEAAAVAGRSESFPKIPAGESASKSPQPAGIAGDT
AGGEAEAAGSVKGDKDGCPTLGEAGSRPAKECWNGDAGGEGAGFRTAETS
GSATSTDKGPNIWGLIGGVVGRIG
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