mRNA_S-firma_F_contig10949.1258.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10949.1258.1
Unique NamemRNA_S-firma_F_contig10949.1258.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10949.1258.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.330e-13
Identity = 64/168 (38.10%), Postives = 84/168 (50.00%), Query Frame = 1 
Query:   46 MAQRELQGRLQLAEQQVRMYREAMKHLIAAPATNPSKPQLPPAVHPSTSATEAAAVAGRS----ESFPKIXXXXXXXXXXXXXXXXG-----DTAGGEAEAAGSVKGDKDGCPTLGEAGSRPAKECWNGDAGGEGAGFRTAETSGSATSTDKGPNIWGLIGGVVGRIG 522
            MA RELQGRLQLAEQQVRMYREAM+HLIAAP+          A +P+ S + A+ ++  +    E+  KI                       T G +AEA    +GD D     G  G++      + D          AE+S  +T+ +KGP+IWG IGG VG IG
Sbjct:    1 MAYRELQGRLQLAEQQVRMYREAMEHLIAAPS----------AAYPAASQSRASPISTTAGVAQENLSKIFAGGENDPDNTKPAPGAIPDVATTGGAKAEAV--AEGDDDSVSDHGRGGTKKEVPRLSSD------DAEGAESSAGSTAAEKGPSIWGFIGGAVGWIG 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10949.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE2.330e-1338.10APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10949contigS-firma_F_contig10949:60..1901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJA3
PFAMsAPG6
Max annot lvl2759|Eukaryota
KEGG koko:K08334,ko:K19683
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
Evalue1.49e-14
EggNOG OGsKOG2751@1|root,KOG2751@2759|Eukaryota
Descriptioncellular response to nitrogen starvation
COG categoryS
BRITEko00000,ko00001,ko03029,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size524
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10949.1258.1prot_S-firma_F_contig10949.1258.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10949 61..1901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.2294896-CDS-S-firma_F_contig10949:60..991622815639.2294896-CDS-S-firma_F_contig10949:60..99Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 61..99 -
1696949471.749652-CDS-S-firma_F_contig10949:60..991696949471.749652-CDS-S-firma_F_contig10949:60..99Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 61..99 -
1622815639.2446108-CDS-S-firma_F_contig10949:477..8671622815639.2446108-CDS-S-firma_F_contig10949:477..867Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 478..867 -
1696949471.7669234-CDS-S-firma_F_contig10949:477..8671696949471.7669234-CDS-S-firma_F_contig10949:477..867Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 478..867 -
1622815639.2574227-CDS-S-firma_F_contig10949:1808..19011622815639.2574227-CDS-S-firma_F_contig10949:1808..1901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 1809..1901 -
1696949471.7781258-CDS-S-firma_F_contig10949:1808..19011696949471.7781258-CDS-S-firma_F_contig10949:1808..1901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10949 1809..1901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10949.1258.1

>prot_S-firma_F_contig10949.1258.1 ID=prot_S-firma_F_contig10949.1258.1|Name=mRNA_S-firma_F_contig10949.1258.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=174bp
CRRQTTATTARQPPAMAQRELQGRLQLAEQQVRMYREAMKHLIAAPATNP
SKPQLPPAVHPSTSATEAAAVAGRSESFPKIPAGESASKSPQPAGIAGDT
AGGEAEAAGSVKGDKDGCPTLGEAGSRPAKECWNGDAGGEGAGFRTAETS
GSATSTDKGPNIWGLIGGVVGRIG
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mRNA from alignment at S-firma_F_contig10949:60..1901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10949.1258.1 ID=mRNA_S-firma_F_contig10949.1258.1|Name=mRNA_S-firma_F_contig10949.1258.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1842bp|location=Sequence derived from alignment at S-firma_F_contig10949:60..1901- (Sphaerotrichia firma ET2_F female)
TGTCGACGACAGACGACTGCGACGACAGCAAGGCAGCCGCCTGCAATGGC
CCAGCGAGAGCTTCAGGGGCGACTCCAGCTCGCCGAGCAGCAGGTGGGAC
GTATGAGTGTCGAAAGTCGAAAGTCGAGGCAACAGAAGGGTTTGTCCGCG
CACCGACCTGTGGGGGGTTATTCGTCCTTCCGTAGTGTGCGTTCCCACCA
CGGCCACGCGGAAGATTGGCTGTGATTGTGGTCTCGAGCACTTAGTGAAG
GGGTGCTCTTTCAAGGCATGGCAACGCTAGCAGCGAAATATTGCCACCTT
GATGTCCCAGCATGTTGAACATCTTGATAGTCTCCTGCTCGTTTGTACAC
AAGCGGACTCTCTCCCTCTCTCTCTCTCCCCCTCTCACTCACTCACGGCC
TGCGCTGTGGAACGAACTAAGGATGTTTTATCTGAGTTTTTTCTCCACGC
ATCGATGAATGTAGCACTTGCCTTGCTCGAGGTATAACGGAGCAGTATCG
CGCAACAAAGCAGTACTCGAAGTACTTGTAGTCAGCAGGCCAACAATGAA
AAACTGGCCTTTCGAAGAGGGTCCCTTCCCGGATCGCAGTCTGGTACTAT
GCAGATGCATATGCGGCGTAATACATGCATCAAGCTTCTATCATACAACC
CCAGAATCGAGGGTATCGCGACGGCATAGCTTTTCCTCGGTTCGAATTCA
AACCACGGCGTGACCTGTACATGCGGAAGTCTACTCTCCTGGGTATTTCC
ACTGATTCCTGCGGCAAGACCCGTGGCCTCTGCTGCGGAGCATAGACCGT
GACACATGTCGTGATACAAAACGGCTGTCGGAGATAAGTCGGAGGAAGAG
CGGGAGAACGGAGAATCTTGTTGGGCATCCGACGCTTCGTGCGGAGGCTT
TTTGCTTGGCCCTACTGGCGGTAAGTAACTGCAGGGCACGCACACCTCCG
CGTATGTCGTCGACGACCGGGAAGGAACTTCGAGAGACCCCGCACAACTC
TCCATACCTCAACACGAACCCGCTTTAAAACCAGGTCCGCATGTACCGCG
AAGCGATGAAGCATCTCATCGCAGCCCCTGCAACAAACCCGTCGAAGCCC
CAGCTACCACCAGCGGTGCACCCATCAACCTCTGCCACGGAAGCGGCCGC
AGTAGCAGGCCGCAGTGAAAGCTTCCCGAAAATTCCCGCCGGGGAATCTG
CTTCCAAGAGCCCGCAGCCAGCCGGGATAGCTGGAGACACTGCCGGAGGA
GAGGCGGAAGCTGCTGGGAGCGTGAAAGGCGATAAGGACGGGTGCCCTAC
TCTCGGGGAGGCCGGGTCCAGGCCGGCGAAGGAGTGTTGGAATGGCGATG
CGGGTGGTGAGGGCGCGGGCTTCAGAACGGCGGAGACCTCCGGCAGCGCG
ACCTCCACGGACAAGGGGCCAAACGTAAGTTCTGGGCCGCTTCTCAAACT
GCAGTTTCATGAGTTTCAACTGACTTCCGCACCTTTTCCAATGCAATAGC
ATTCTTCGGCTTGCAGAAACGTTCGTCATTGGGCACCTTCCAACTCTCAT
GATTTCGATACGGATAGGAGTAGAGCCCGCGCAATAGTATGTAGGAAGCA
ACAGGCAAAGTGCCTCGTGCGGTCAGCTGGCTTCAGTCTTGAGCAGCAGG
ATGGAGCTAGTTGCAGCGACCTTCCGCTCACGGCTGTTCCCTTCCCATGG
CGATGTGGCTCCCGCCAAACACCTCCCGCCTCGCCATTTTTTTACATTGG
CGTCGTTCGTTTCTCCGCCTCCTACCCACCGATCATGCGTTTATCCAATC
AGATTTGGGGCTTGATTGGGGGTGTCGTGGGTCGGATTGGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10949:60..1901-

>mRNA_S-firma_F_contig10949.1258.1 ID=mRNA_S-firma_F_contig10949.1258.1|Name=mRNA_S-firma_F_contig10949.1258.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1044bp|location=Sequence derived from alignment at S-firma_F_contig10949:60..1901- (Sphaerotrichia firma ET2_F female)
TGTCGACGACAGACGACTGCGACGACAGCAAGGCAGCCGCCTGCAATGGC
CCAGCGAGAGCTTCAGGGGCGACTCCAGCTCGCCGAGCAGCAGTGTCGAC
GACAGACGACTGCGACGACAGCAAGGCAGCCGCCTGCAATGGCCCAGCGA
GAGCTTCAGGGGCGACTCCAGCTCGCCGAGCAGCAGGTCCGCATGTACCG
CGAAGCGATGAAGCATCTCATCGCAGCCCCTGCAACAAACCCGTCGAAGC
CCCAGCTACCACCAGCGGTGCACCCATCAACCTCTGCCACGGAAGCGGCC
GCAGTAGCAGGCCGCAGTGAAAGCTTCCCGAAAATTCCCGCCGGGGAATC
TGCTTCCAAGAGCCCGCAGCCAGCCGGGATAGCTGGAGACACTGCCGGAG
GAGAGGCGGAAGCTGCTGGGAGCGTGAAAGGCGATAAGGACGGGTGCCCT
ACTCTCGGGGAGGCCGGGTCCAGGCCGGCGAAGGAGTGTTGGAATGGCGA
TGCGGGTGGTGAGGGCGCGGGCTTCAGAACGGCGGAGACCTCCGGCAGCG
CGACCTCCACGGACAAGGGGCCAAACGTCCGCATGTACCGCGAAGCGATG
AAGCATCTCATCGCAGCCCCTGCAACAAACCCGTCGAAGCCCCAGCTACC
ACCAGCGGTGCACCCATCAACCTCTGCCACGGAAGCGGCCGCAGTAGCAG
GCCGCAGTGAAAGCTTCCCGAAAATTCCCGCCGGGGAATCTGCTTCCAAG
AGCCCGCAGCCAGCCGGGATAGCTGGAGACACTGCCGGAGGAGAGGCGGA
AGCTGCTGGGAGCGTGAAAGGCGATAAGGACGGGTGCCCTACTCTCGGGG
AGGCCGGGTCCAGGCCGGCGAAGGAGTGTTGGAATGGCGATGCGGGTGGT
GAGGGCGCGGGCTTCAGAACGGCGGAGACCTCCGGCAGCGCGACCTCCAC
GGACAAGGGGCCAAACATTTGGGGCTTGATTGGGGGTGTCGTGGGTCGGA
TTGGGATTTGGGGCTTGATTGGGGGTGTCGTGGGTCGGATTGGG
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