prot_S-firma_F_contig10897.1187.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10897.1187.1
Unique Nameprot_S-firma_F_contig10897.1187.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length102
Homology
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BLAST of mRNA_S-firma_F_contig10897.1187.1 vs. uniprot
Match: A0A7R9ZCB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCB3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.120e-10
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 0 
Query:    1 SVAVVLNFFFLVTLFGPLMVWDVKRQLAGRADLVFAK---------WGKPADLHAAPHGEKVV-------IDASDEG-----FVNKFYGPLLTNPLVKFVVVAAFGTLLGIMAWRGFDHNEFG 102
            S+AV+LNF +L+  F P+MV+D KR L  R DL+  K            P+      H  + +       +   D+      FV KFYGP+L  P+ K +V+  FG L G +     ++ + G
Sbjct:   55 SMAVLLNFIYLLCFFAPMMVFDTKRMLDNRMDLILLKVEDSDAAGAGASPSKKPLQQHDVRRITTDQLARLSVRDDVNPLTVFVRKFYGPILMYPITKVLVLIGFGLLFGFLTHNALENTDIG 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10897.1187.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9ZCB3_9STRA7.120e-1030.89Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 1..90
e-value: 1.2E-4
score: 20.3
NoneNo IPR availablePANTHERPTHR10796PATCHED-RELATEDcoord: 2..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..96
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 97..102
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.65
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 74..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10897contigS-firma_F_contig10897:448..809 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10897.1187.1mRNA_S-firma_F_contig10897.1187.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10897 448..809 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10897.1187.1 ID=prot_S-firma_F_contig10897.1187.1|Name=mRNA_S-firma_F_contig10897.1187.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
SVAVVLNFFFLVTLFGPLMVWDVKRQLAGRADLVFAKWGKPADLHAAPHG
EKVVIDASDEGFVNKFYGPLLTNPLVKFVVVAAFGTLLGIMAWRGFDHNE
FG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp