mRNA_S-firma_F_contig10897.1187.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10897.1187.1
Unique NamemRNA_S-firma_F_contig10897.1187.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10897.1187.1 vs. uniprot
Match: A0A7R9ZCB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCB3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.120e-10
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 1 
Query:    1 SVAVVLNFFFLVTLFGPLMVWDVKRQLAGRADLVFAK---------WGKPADLHAAPHGEKVV-------IDASDEG-----FVNKFYGPLLTNPLVKFVVVAAFGTLLGIMAWRGFDHNEFG 306
            S+AV+LNF +L+  F P+MV+D KR L  R DL+  K            P+      H  + +       +   D+      FV KFYGP+L  P+ K +V+  FG L G +     ++ + G
Sbjct:   55 SMAVLLNFIYLLCFFAPMMVFDTKRMLDNRMDLILLKVEDSDAAGAGASPSKKPLQQHDVRRITTDQLARLSVRDDVNPLTVFVRKFYGPILMYPITKVLVLIGFGLLFGFLTHNALENTDIG 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10897.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9ZCB3_9STRA7.120e-1030.89Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10897contigS-firma_F_contig10897:448..809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog81824.XP_001747937.1
PFAMsPatched
Max annot lvl33154|Opisthokonta
Evalue1.8e-10
EggNOG OGsKOG1935@1|root,KOG1935@2759|Eukaryota,39QBC@33154|Opisthokonta
DescriptionSterol-sensing domain of SREBP cleavage-activation
COG categoryT
Hectar predicted targeting categorysignal peptide
Exons2
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.030299-CDS-S-firma_F_contig10897:447..5401622815633.030299-CDS-S-firma_F_contig10897:447..540Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 448..540 -
1696949467.6223137-CDS-S-firma_F_contig10897:447..5401696949467.6223137-CDS-S-firma_F_contig10897:447..540Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 448..540 -
1622815633.045858-CDS-S-firma_F_contig10897:596..8091622815633.045858-CDS-S-firma_F_contig10897:596..809Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 597..809 -
1696949467.6488047-CDS-S-firma_F_contig10897:596..8091696949467.6488047-CDS-S-firma_F_contig10897:596..809Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10897 597..809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10897.1187.1prot_S-firma_F_contig10897.1187.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10897 448..809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10897.1187.1

>prot_S-firma_F_contig10897.1187.1 ID=prot_S-firma_F_contig10897.1187.1|Name=mRNA_S-firma_F_contig10897.1187.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
SVAVVLNFFFLVTLFGPLMVWDVKRQLAGRADLVFAKWGKPADLHAAPHG
EKVVIDASDEGFVNKFYGPLLTNPLVKFVVVAAFGTLLGIMAWRGFDHNE
FG
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mRNA from alignment at S-firma_F_contig10897:448..809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10897.1187.1 ID=mRNA_S-firma_F_contig10897.1187.1|Name=mRNA_S-firma_F_contig10897.1187.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=362bp|location=Sequence derived from alignment at S-firma_F_contig10897:448..809- (Sphaerotrichia firma ET2_F female)
AGCGTCGCTGTCGTCCTCAACTTTTTCTTCCTGGTGACCCTGTTTGGCCC
GCTGATGGTGTGGGACGTCAAGCGCCAGCTGGCGGGCCGCGCCGACCTTG
TGTTTGCTAAGTGGGGGAAGCCCGCAGACTTGCACGCGGCGCCCCACGGT
GAGAAGGTGGTCATTGACGCCTCCGACGAGGGCTTTGTCAACAAGTTCTA
CGGCCCGCTGTTGGTGAGATAGAGGGAGCGTGCGTGAGATGTGTGCGCGG
TGTTTACCCCCCCCCCCAGACCAACCCGCTGGTCAAGTTTGTGGTGGTGG
CGGCCTTTGGGACGCTGCTTGGCATCATGGCGTGGCGTGGGTTTGACCAC
AACGAGTTTGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10897:448..809-

>mRNA_S-firma_F_contig10897.1187.1 ID=mRNA_S-firma_F_contig10897.1187.1|Name=mRNA_S-firma_F_contig10897.1187.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_F_contig10897:448..809- (Sphaerotrichia firma ET2_F female)
AGCGTCGCTGTCGTCCTCAACTTTTTCTTCCTGGTGACCCTGTTTGGCCC
GCTGATGGTGTGGGACGTCAAGCGCCAGCTGGCGGGCCGCGCCGACCTTG
TGTTTGCTAAGTGGGGGAAGCCCGCAGACTTGCACGCGGCGCCCCACGGT
GAGAAGGTGGTCATTGACGCCTCCGACGAGGGCTTTGTCAACAAGTTCTA
CGGCCCGCTGTTGAGCGTCGCTGTCGTCCTCAACTTTTTCTTCCTGGTGA
CCCTGTTTGGCCCGCTGATGGTGTGGGACGTCAAGCGCCAGCTGGCGGGC
CGCGCCGACCTTGTGTTTGCTAAGTGGGGGAAGCCCGCAGACTTGCACGC
GGCGCCCCACGGTGAGAAGGTGGTCATTGACGCCTCCGACGAGGGCTTTG
TCAACAAGTTCTACGGCCCGCTGTTGACCAACCCGCTGGTCAAGTTTGTG
GTGGTGGCGGCCTTTGGGACGCTGCTTGGCATCATGGCGTGGCGTGGGTT
TGACCACAACGAGTTTGGGACCAACCCGCTGGTCAAGTTTGTGGTGGTGG
CGGCCTTTGGGACGCTGCTTGGCATCATGGCGTGGCGTGGGTTTGACCAC
AACGAGTTTGGG
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