prot_S-firma_F_contig10890.1183.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_F_contig10890.1183.1
Unique Name	prot_S-firma_F_contig10890.1183.1
Type	polypeptide
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length	200

Homology

[Close]

BLAST of mRNA_S-firma_F_contig10890.1183.1 vs. uniprot
Match: A0A6H5JJN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN7_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.210e-67
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0

Query:   58 MPRASRRSRAPAAGQSSLQRTPSARXXXXXXXWLRFCRLLAKQKWRGIGVMGAVTILLAALLLCLTAYFEQWGQHLTTSSSVDSSAPAPNTEDPSYFEDKDVPRVFEEYATLHNSATASPMNAKYVLYEMPGNTTLAHSLFGL 200
            MPRASRRSRAP AG ++L+RTPS+R XXXXX WLR CRLLA+QKWRGIGVMG VTI LAALLLCLTAYFEQWGQ  TT SS+DSSAPAP TEDPSYFEDKD+P+VF +YA LHNSATASPMNAKYV+YEMPGNTT+A SLFGL
Sbjct:    1 MPRASRRSRAPVAG-ATLERTPSSRRXXXXXRWLRLCRLLARQKWRGIGVMGVVTIFLAALLLCLTAYFEQWGQAFTTGSSLDSSAPAPQTEDPSYFEDKDIPKVFTDYAVLHNSATASPMNAKYVVYEMPGNTTVAQSLFGL 142

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10890.1183.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10890.1183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JJN7_9PHAE	1.210e-67	82.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 127..200
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..104
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 105..126
None	No IPR available	TMHMM	TMhelix		coord: 20..39
None	No IPR available	TMHMM	TMhelix		coord: 104..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10890	contig	S-firma_F_contig10890:3530..4285 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10890.1183.1	mRNA_S-firma_F_contig10890.1183.1	Sphaerotrichia firma ET2_F female	mRNA	S-firma_F_contig10890 3530..4285 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_F_contig10890.1183.1 ID=prot_S-firma_F_contig10890.1183.1|Name=mRNA_S-firma_F_contig10890.1183.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=200bp
GGFLKGQGSSVPLLPRHTPGAAAQGVGFVLVFNTSLRLLRPNQPCTPATT
ATPTSVPMPRASRRSRAPAAGQSSLQRTPSARRRRRRRRWLRFCRLLAKQ
KWRGIGVMGAVTILLAALLLCLTAYFEQWGQHLTTSSSVDSSAPAPNTED
PSYFEDKDVPRVFEEYATLHNSATASPMNAKYVLYEMPGNTTLAHSLFGL