mRNA_S-firma_F_contig10890.1183.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10890.1183.1
Unique NamemRNA_S-firma_F_contig10890.1183.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10890.1183.1 vs. uniprot
Match: A0A6H5JJN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN7_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.210e-67
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:  172 MPRASRRSRAPAAGQSSLQRTPSARXXXXXXXWLRFCRLLAKQKWRGIGVMGAVTILLAALLLCLTAYFEQWGQHLTTSSSVDSSAPAPNTEDPSYFEDKDVPRVFEEYATLHNSATASPMNAKYVLYEMPGNTTLAHSLFGL 600
            MPRASRRSRAP AG ++L+RTPS+R XXXXX WLR CRLLA+QKWRGIGVMG VTI LAALLLCLTAYFEQWGQ  TT SS+DSSAPAP TEDPSYFEDKD+P+VF +YA LHNSATASPMNAKYV+YEMPGNTT+A SLFGL
Sbjct:    1 MPRASRRSRAPVAG-ATLERTPSSRRXXXXXRWLRLCRLLARQKWRGIGVMGVVTIFLAALLLCLTAYFEQWGQAFTTGSSLDSSAPAPQTEDPSYFEDKDIPKVFTDYAVLHNSATASPMNAKYVVYEMPGNTTVAQSLFGL 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10890.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJN7_9PHAE1.210e-6782.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10890contigS-firma_F_contig10890:3530..4285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size602
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.5700972-CDS-S-firma_F_contig10890:3529..37951622815632.5700972-CDS-S-firma_F_contig10890:3529..3795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10890 3530..3795 +
1696949467.3752143-CDS-S-firma_F_contig10890:3529..37951696949467.3752143-CDS-S-firma_F_contig10890:3529..3795Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10890 3530..3795 +
1622815632.5832913-CDS-S-firma_F_contig10890:3951..42851622815632.5832913-CDS-S-firma_F_contig10890:3951..4285Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10890 3952..4285 +
1696949467.389109-CDS-S-firma_F_contig10890:3951..42851696949467.389109-CDS-S-firma_F_contig10890:3951..4285Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10890 3952..4285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10890.1183.1prot_S-firma_F_contig10890.1183.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10890 3530..4285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10890.1183.1

>prot_S-firma_F_contig10890.1183.1 ID=prot_S-firma_F_contig10890.1183.1|Name=mRNA_S-firma_F_contig10890.1183.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=200bp
GGFLKGQGSSVPLLPRHTPGAAAQGVGFVLVFNTSLRLLRPNQPCTPATT
ATPTSVPMPRASRRSRAPAAGQSSLQRTPSARRRRRRRRWLRFCRLLAKQ
KWRGIGVMGAVTILLAALLLCLTAYFEQWGQHLTTSSSVDSSAPAPNTED
PSYFEDKDVPRVFEEYATLHNSATASPMNAKYVLYEMPGNTTLAHSLFGL
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mRNA from alignment at S-firma_F_contig10890:3530..4285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10890.1183.1 ID=mRNA_S-firma_F_contig10890.1183.1|Name=mRNA_S-firma_F_contig10890.1183.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=756bp|location=Sequence derived from alignment at S-firma_F_contig10890:3530..4285+ (Sphaerotrichia firma ET2_F female)
GGCGGGTTCCTCAAGGGTCAGGGTTCCTCTGTTCCTCTGCTTCCTCGCCA
CACGCCCGGCGCAGCAGCGCAAGGTGTTGGTTTTGTGTTGGTTTTTAACA
CCTCTCTCCGGCTTCTCCGACCCAACCAACCCTGTACTCCAGCAACTACA
GCCACGCCTACCTCAGTCCCGATGCCGCGTGCCTCTCGGCGCTCTCGGGC
GCCGGCTGCAGGACAGTCATCGTTACAACGAACACCAAGCGCTCGACGAC
GTCGACGACGACGAAGGTGTGCTTGTTGCCGTTTCCCCGCTTGACCGCAC
CTCACCTCCCTCTCTCCGCAACTTCACAGTTTTCGGATGGCGATCGCCCT
CGGGCCAGTGCTGTTTGTGTCAGCCTCAAAGAGGACTCACGCCCGTCCGT
GTTTCGTATCGATGTCGTCCAGATGGCTTCGATTCTGTCGCCTACTTGCG
AAGCAGAAGTGGCGAGGCATTGGAGTTATGGGCGCTGTGACGATCCTTCT
GGCAGCGTTGCTGCTCTGCTTGACGGCGTACTTCGAGCAGTGGGGCCAGC
ATCTCACCACTAGCTCGTCCGTCGACAGCTCGGCGCCGGCGCCGAATACC
GAGGACCCATCGTACTTCGAAGATAAGGATGTTCCACGCGTGTTCGAGGA
GTATGCCACTCTTCACAACAGCGCCACCGCCAGCCCGATGAACGCCAAGT
ACGTCTTGTACGAGATGCCGGGGAACACGACCTTGGCACACTCGCTGTTT
GGCTTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10890:3530..4285+

>mRNA_S-firma_F_contig10890.1183.1 ID=mRNA_S-firma_F_contig10890.1183.1|Name=mRNA_S-firma_F_contig10890.1183.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1200bp|location=Sequence derived from alignment at S-firma_F_contig10890:3530..4285+ (Sphaerotrichia firma ET2_F female)
GGCGGGTTCCTCAAGGGTCAGGGTTCCTCTGTTCCTCTGCTTCCTCGCCA
CACGCCCGGCGCAGCAGCGCAAGGTGTTGGTTTTGTGTTGGTTTTTAACA
CCTCTCTCCGGCTTCTCCGACCCAACCAACCCTGTACTCCAGCAACTACA
GCCACGCCTACCTCAGTCCCGATGCCGCGTGCCTCTCGGCGCTCTCGGGC
GCCGGCTGCAGGACAGTCATCGTTACAACGAACACCAAGCGCTCGACGAC
GTCGACGACGACGAAGGGCGGGTTCCTCAAGGGTCAGGGTTCCTCTGTTC
CTCTGCTTCCTCGCCACACGCCCGGCGCAGCAGCGCAAGGTGTTGGTTTT
GTGTTGGTTTTTAACACCTCTCTCCGGCTTCTCCGACCCAACCAACCCTG
TACTCCAGCAACTACAGCCACGCCTACCTCAGTCCCGATGCCGCGTGCCT
CTCGGCGCTCTCGGGCGCCGGCTGCAGGACAGTCATCGTTACAACGAACA
CCAAGCGCTCGACGACGTCGACGACGACGAAGATGGCTTCGATTCTGTCG
CCTACTTGCGAAGCAGAAGTGGCGAGGCATTGGAGTTATGGGCGCTGTGA
CGATCCTTCTGGCAGCGTTGCTGCTCTGCTTGACGGCGTACTTCGAGCAG
TGGGGCCAGCATCTCACCACTAGCTCGTCCGTCGACAGCTCGGCGCCGGC
GCCGAATACCGAGGACCCATCGTACTTCGAAGATAAGGATGTTCCACGCG
TGTTCGAGGAGTATGCCACTCTTCACAACAGCGCCACCGCCAGCCCGATG
AACGCCAAGTACGTCTTGTACGAGATGCCGGGGAACACGACCTTGGCACA
CTCGCTGTTTGGCTTGATGGCTTCGATTCTGTCGCCTACTTGCGAAGCAG
AAGTGGCGAGGCATTGGAGTTATGGGCGCTGTGACGATCCTTCTGGCAGC
GTTGCTGCTCTGCTTGACGGCGTACTTCGAGCAGTGGGGCCAGCATCTCA
CCACTAGCTCGTCCGTCGACAGCTCGGCGCCGGCGCCGAATACCGAGGAC
CCATCGTACTTCGAAGATAAGGATGTTCCACGCGTGTTCGAGGAGTATGC
CACTCTTCACAACAGCGCCACCGCCAGCCCGATGAACGCCAAGTACGTCT
TGTACGAGATGCCGGGGAACACGACCTTGGCACACTCGCTGTTTGGCTTG
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