prot_S-firma_F_contig1088.1165.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1088.1165.1
Unique Nameprot_S-firma_F_contig1088.1165.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length272
Homology
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 1.040e-127
Identity = 221/277 (79.78%), Postives = 230/277 (83.03%), Query Frame = 0
Query:    5 SFVGGCVVAAAAVASLQASPAGAFAPPAFVPSGPASLSNCRSCSSTSSAVPRASSGSXXXXXXSSPR-QQTRGWGAR---------GIGVTRMSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 271
            SF+ G  VAA A  SLQ S AGAFAPPAFVP+GPA   +CRSCSS            XXXXXX     QQ RGWG+           +   RMSSTDIESPFA+PGMADMG+GE D DALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGPEL VENVEKVLDGVRPFLSVAGGSI IQSLTGVSSIQPV+TLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP
Sbjct:    4 SFMRGIAVAAVAAISLQNSRAGAFAPPAFVPAGPA---HCRSCSSXXXXXXXXXXXXXXXXXXXXXXXQQARGWGSAPRRNGASESAVAPRRMSSTDIESPFASPGMADMGDGE-DADALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 276          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 253 bits (645), Expect = 9.520e-82
Identity = 129/183 (70.49%), Postives = 153/183 (83.61%), Query Frame = 0
Query:   88 SSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 270
            +   IESPFA  G    G+     D  L LTLENVE VLDEMRPYLMSDGGNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP+LN+E +EKVLDGVRPFLSVAGG+I + +L GV  +QP + LKMTG S+SL+S++MEIMQR+QR FM+S LR+++A
Sbjct:    3 TEVQIESPFAGGGGVAGGD-----DGPLPLTLENVELVLDEMRPYLMSDGGNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQLNMEEIEKVLDGVRPFLSVAGGAISVAALEGVGGMQPHIALKMTGKSSSLQSVKMEIMQRLQRHFMLSGLRIDWA 180          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 232 bits (592), Expect = 6.290e-73
Identity = 119/184 (64.67%), Postives = 147/184 (79.89%), Query Frame = 0
Query:   86 RMSSTDIESPF--ATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRV 267
            +  S D+ESPF   TP   D        ++ L LTL+NVE VLDEMRPYLMSDGGNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ PEL+   VE VLDGVRPFL VAGGSI +Q ++GV  +QP++ LKM GSSA+L+S+++EIMQR+QR FM++ LR+
Sbjct:   66 QQESIDVESPFQSGTPTARD--------NSHLPLTLDNVELVLDEMRPYLMSDGGNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELSEAGVESVLDGVRPFLQVAGGSITLQEISGVGGLQPMIVLKMEGSSATLQSVKVEIMQRLQRNFMVAGLRI 241          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S2E835_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E835_TRICV)

HSP 1 Score: 225 bits (574), Expect = 6.250e-70
Identity = 114/159 (71.70%), Postives = 133/159 (83.65%), Query Frame = 0
Query:  112 DALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 270
            DA L LT ENVE+VLDEMRP+L+ DGGNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER L +RIPEI EVVQS+P GP L VE V+ VLDGVRPFL VAGG+I  +S+ G  S+QPV+TLKM GSSASL S+++EI QR+QR FMMS LRVE+A
Sbjct:  106 DAPLELTYENVESVLDEMRPFLIQDGGNVAITEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLRERIPEIQEVVQSLPEGPPLEVEQVDVVLDGVRPFLQVAGGTIDCESIRGEGSVQPVITLKMEGSSASLNSVKLEIAQRMQRHFMMSGLRVEWA 264          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.180e-69
Identity = 121/194 (62.37%), Postives = 148/194 (76.29%), Query Frame = 0
Query:   79 ARGIGVTRMSSTD---IESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 269
            A  I V  +SST    I SPF +    D G+     D  L LTLENVE VLDEMRPYLMSDGGNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI ++ ++G+  +QP+V L M G++ SL S+RMEI QRI R FM+  LRVE+
Sbjct:   58 ASSIRVVPLSSTSTDTITSPFESGVKQDGGD-----DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 246          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.220e-68
Identity = 116/188 (61.70%), Postives = 147/188 (78.19%), Query Frame = 0
Query:   82 IGVTRMSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 269
            + ++R S+  I SPF +      G G+   D  L LTLENVE VLDEMRPYLMSDGGNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI ++ ++G+  +QP+V L M G++ SL S+RMEI QRI R FM+  LRVE+
Sbjct:   61 VPLSRTSTDTITSPFESG--VKQGGGD---DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.660e-68
Identity = 114/184 (61.96%), Postives = 143/184 (77.72%), Query Frame = 0
Query:   87 MSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 270
            +S  D  SP  TP      +  E  D  L LT +NVE VL+EMRPYL+SDGGNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GPEL  E +  VLDGVRPFL VAGGSI ++S++G + +QP +TLKM G+SASLKS+++EI QR+QR FM++ LRV++A
Sbjct:    4 ISPFDSSSPAYTPT-----DPVELDDGPLELTWDNVELVLEEMRPYLISDGGNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPELCEEEINVVLDGVRPFLQVAGGSIDVESISGENGLQPTITLKMEGASASLKSVKLEIAQRLQRHFMVAGLRVDWA 182          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1G1H4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA)

HSP 1 Score: 219 bits (559), Expect = 6.970e-68
Identity = 118/200 (59.00%), Postives = 148/200 (74.00%), Query Frame = 0
Query:   84 VTRMSSTDIESPFATPGMADMGEGEEDKDA-------------LLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 270
            +T  +  DI SPFA       G G   ++A             +L LTLENVE VLDEMRP+L +DGG+V + +IDGPVV+L+LEGACG+CPSST TMKMGLERRL +RIPEI EVVQ++P GP LN + +  VLDGVRPFL+VAGGSI I S++G  S+QPV+TL+MTG+SASL S+++EI QRIQR FMMS LR+ +A
Sbjct:   42 MTIEADADIISPFAG------GSGVPSEEAPPADPSFLRTDLPILDLTLENVEIVLDEMRPFLQADGGDVSIDDIDGPVVKLQLEGACGTCPSSTQTMKMGLERRLKERIPEIQEVVQAMPEGPPLNEDQINVVLDGVRPFLNVAGGSIDIASISGEMSVQPVITLEMTGASASLNSVKLEIEQRIQRHFMMSGLRITWA 235          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.500e-67
Identity = 106/155 (68.39%), Postives = 135/155 (87.10%), Query Frame = 0
Query:  115 LTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 269
            L L  +NV+ +LDEMRPYL+SDGGNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL + IPEISEVVQ++P+ P L  E+V+ +L+G+RPFL VAGG I+I+SLTGV SIQP + LKMTG+S+S++S+++EIMQRIQR FM+S LR++F
Sbjct:   89 LDLNWDNVDLILDEMRPYLISDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEAIPEISEVVQAMPDSPPLTEESVDGILEGIRPFLQVAGGKIEIESLTGVDSIQPQLVLKMTGASSSIQSVKLEIMQRIQRFFMISGLRIDF 243          
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 214 bits (545), Expect = 7.750e-66
Identity = 106/156 (67.95%), Postives = 130/156 (83.33%), Query Frame = 0
Query:  115 LTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 270
            L LT ENVE VLDEMRPYL+ DGGNV++ EIDGPVVRL+LEGACG+CPSST TMKMGLERRL +RIPEI EV+Q++P GP+L  + V  VLDGVRPFL VAGG+I I  + G+ S+QP +TLKM G+SASL S+++EI QR+QR FM++ LRVE+A
Sbjct:   88 LDLTEENVELVLDEMRPYLIQDGGNVKIQEIDGPVVRLQLEGACGTCPSSTQTMKMGLERRLRERIPEIQEVIQAMPQGPDLCDDEVNVVLDGVRPFLQVAGGTIDIVVIEGIGSLQPTITLKMEGASASLNSVKLEIAQRLQRHFMVAGLRVEWA 243          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE1.040e-12779.78NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA9.520e-8270.49NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA6.290e-7364.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2E835_TRICV6.250e-7071.70Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9D2Y8_9STRA1.180e-6962.37NifU domain-containing protein n=1 Tax=Nannochloro... [more]
W7TNI1_9STRA1.220e-6861.70Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S1H4I0_9STRA1.660e-6861.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1G1H4_9STRA6.970e-6859.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2C848_9STRA3.500e-6768.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1D6Z8_CYCTE7.750e-6667.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 114..192
e-value: 2.6E-30
score: 106.0
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 195..267
e-value: 1.9E-18
score: 68.1
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 195..257
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 119..190
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 201..259
e-value: 5.9E-5
score: 23.1
coord: 122..187
e-value: 9.3E-25
score: 86.6
NoneNo IPR availablePANTHERPTHR11178:SF39NIFU-LIKE PROTEIN 2, CHLOROPLASTICcoord: 109..257
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 109..257
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..271
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePRODOMPD002830coord: 127..188
e-value: 2.0E-22
score: 262.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.529

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:2164..5243 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1165.1mRNA_S-firma_F_contig1088.1165.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1088 2052..6650 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1088.1165.1 ID=prot_S-firma_F_contig1088.1165.1|Name=mRNA_S-firma_F_contig1088.1165.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=272bp
MRSASFVGGCVVAAAAVASLQASPAGAFAPPAFVPSGPASLSNCRSCSST
SSAVPRASSGSSSSGSTSSPRQQTRGWGARGIGVTRMSSTDIESPFATPG
MADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVV
RLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVEN
VEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRM
EIMQRIQREFMMSSLRVEFAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001075NIF_FeS_clus_asmbl_NifU_C
IPR034904FSCA_dom_sf