mRNA_S-firma_F_contig1088.1165.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1088.1165.1
Unique NamemRNA_S-firma_F_contig1088.1165.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 2.060e-120
Identity = 221/277 (79.78%), Postives = 230/277 (83.03%), Query Frame = 2 
Query:  125 SFVGGCVVAAAAVASLQASPAGAFAPPAFVPSGPASLSNCRSCSSTSSAVPRASSGSXXXXXXSSPR-QQTRGWGAR---------GIGVTRMSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 925
            SF+ G  VAA A  SLQ S AGAFAPPAFVP+GPA   +CRSCSS            XXXXXX     QQ RGWG+           +   RMSSTDIESPFA+PGMADMG+GE D DALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGPEL VENVEKVLDGVRPFLSVAGGSI IQSLTGVSSIQPV+TLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP
Sbjct:    4 SFMRGIAVAAVAAISLQNSRAGAFAPPAFVPAGPA---HCRSCSSXXXXXXXXXXXXXXXXXXXXXXXQQARGWGSAPRRNGASESAVAPRRMSSTDIESPFASPGMADMGDGE-DADALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 276
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.030e-75
Identity = 129/183 (70.49%), Postives = 153/183 (83.61%), Query Frame = 2 
Query:  374 SSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 922
            +   IESPFA  G    G+     D  L LTLENVE VLDEMRPYLMSDGGNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP+LN+E +EKVLDGVRPFLSVAGG+I + +L GV  +QP + LKMTG S+SL+S++MEIMQR+QR FM+S LR+++A
Sbjct:    3 TEVQIESPFAGGGGVAGGD-----DGPLPLTLENVELVLDEMRPYLMSDGGNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQLNMEEIEKVLDGVRPFLSVAGGAISVAALEGVGGMQPHIALKMTGKSSSLQSVKMEIMQRLQRHFMLSGLRIDWA 180
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 232 bits (591), Expect = 3.100e-67
Identity = 119/184 (64.67%), Postives = 147/184 (79.89%), Query Frame = 2 
Query:  368 RMSSTDIESPF--ATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRV 913
            +  S D+ESPF   TP   D        ++ L LTL+NVE VLDEMRPYLMSDGGNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ PEL+   VE VLDGVRPFL VAGGSI +Q ++GV  +QP++ LKM GSSA+L+S+++EIMQR+QR FM++ LR+
Sbjct:   66 QQESIDVESPFQSGTPTARD--------NSHLPLTLDNVELVLDEMRPYLMSDGGNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELSEAGVESVLDGVRPFLQVAGGSITLQEISGVGGLQPMIVLKMEGSSATLQSVKVEIMQRLQRNFMVAGLRI 241
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S2E835_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E835_TRICV)

HSP 1 Score: 225 bits (573), Expect = 2.290e-64
Identity = 114/159 (71.70%), Postives = 133/159 (83.65%), Query Frame = 2 
Query:  446 DALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 922
            DA L LT ENVE+VLDEMRP+L+ DGGNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER L +RIPEI EVVQS+P GP L VE V+ VLDGVRPFL VAGG+I  +S+ G  S+QPV+TLKM GSSASL S+++EI QR+QR FMMS LRVE+A
Sbjct:  106 DAPLELTYENVESVLDEMRPFLIQDGGNVAITEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLRERIPEIQEVVQSLPEGPPLEVEQVDVVLDGVRPFLQVAGGTIDCESIRGEGSVQPVITLKMEGSSASLNSVKLEIAQRMQRHFMMSGLRVEWA 264
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.090e-64
Identity = 121/194 (62.37%), Postives = 148/194 (76.29%), Query Frame = 2 
Query:  347 ARGIGVTRMSSTD---IESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 919
            A  I V  +SST    I SPF +    D G+     D  L LTLENVE VLDEMRPYLMSDGGNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI ++ ++G+  +QP+V L M G++ SL S+RMEI QRI R FM+  LRVE+
Sbjct:   58 ASSIRVVPLSSTSTDTITSPFESGVKQDGGD-----DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 246
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.770e-63
Identity = 116/188 (61.70%), Postives = 147/188 (78.19%), Query Frame = 2 
Query:  356 IGVTRMSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 919
            + ++R S+  I SPF +      G G+   D  L LTLENVE VLDEMRPYLMSDGGNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI ++ ++G+  +QP+V L M G++ SL S+RMEI QRI R FM+  LRVE+
Sbjct:   61 VPLSRTSTDTITSPFESG--VKQGGGD---DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.510e-63
Identity = 114/184 (61.96%), Postives = 143/184 (77.72%), Query Frame = 2 
Query:  371 MSSTDIESPFATPGMADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 922
            +S  D  SP  TP      +  E  D  L LT +NVE VL+EMRPYL+SDGGNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GPEL  E +  VLDGVRPFL VAGGSI ++S++G + +QP +TLKM G+SASLKS+++EI QR+QR FM++ LRV++A
Sbjct:    4 ISPFDSSSPAYTPT-----DPVELDDGPLELTWDNVELVLEEMRPYLISDGGNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPELCEEEINVVLDGVRPFLQVAGGSIDVESISGENGLQPTITLKMEGASASLKSVKLEIAQRLQRHFMVAGLRVDWA 182
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1G1H4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.960e-62
Identity = 118/200 (59.00%), Postives = 148/200 (74.00%), Query Frame = 2 
Query:  362 VTRMSSTDIESPFATPGMADMGEGEEDKDA-------------LLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 922
            +T  +  DI SPFA       G G   ++A             +L LTLENVE VLDEMRP+L +DGG+V + +IDGPVV+L+LEGACG+CPSST TMKMGLERRL +RIPEI EVVQ++P GP LN + +  VLDGVRPFL+VAGGSI I S++G  S+QPV+TL+MTG+SASL S+++EI QRIQR FMMS LR+ +A
Sbjct:   42 MTIEADADIISPFAG------GSGVPSEEAPPADPSFLRTDLPILDLTLENVEIVLDEMRPFLQADGGDVSIDDIDGPVVKLQLEGACGTCPSSTQTMKMGLERRLKERIPEIQEVVQAMPEGPPLNEDQINVVLDGVRPFLNVAGGSIDIASISGEMSVQPVITLEMTGASASLNSVKLEIEQRIQRHFMMSGLRITWA 235
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 217 bits (553), Expect = 9.010e-62
Identity = 106/155 (68.39%), Postives = 135/155 (87.10%), Query Frame = 2 
Query:  455 LTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 919
            L L  +NV+ +LDEMRPYL+SDGGNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL + IPEISEVVQ++P+ P L  E+V+ +L+G+RPFL VAGG I+I+SLTGV SIQP + LKMTG+S+S++S+++EIMQRIQR FM+S LR++F
Sbjct:   89 LDLNWDNVDLILDEMRPYLISDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEAIPEISEVVQAMPDSPPLTEESVDGILEGIRPFLQVAGGKIEIESLTGVDSIQPQLVLKMTGASSSIQSVKLEIMQRIQRFFMISGLRIDF 243
[Close]
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 214 bits (544), Expect = 1.690e-60
Identity = 106/156 (67.95%), Postives = 130/156 (83.33%), Query Frame = 2 
Query:  455 LTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVENVEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFA 922
            L LT ENVE VLDEMRPYL+ DGGNV++ EIDGPVVRL+LEGACG+CPSST TMKMGLERRL +RIPEI EV+Q++P GP+L  + V  VLDGVRPFL VAGG+I I  + G+ S+QP +TLKM G+SASL S+++EI QR+QR FM++ LRVE+A
Sbjct:   88 LDLTEENVELVLDEMRPYLIQDGGNVKIQEIDGPVVRLQLEGACGTCPSSTQTMKMGLERRLRERIPEIQEVIQAMPQGPDLCDDEVNVVLDGVRPFLQVAGGTIDIVVIEGIGSLQPTITLKMEGASASLNSVKLEIAQRLQRHFMVAGLRVEWA 243
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1088.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE2.060e-12079.78NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA1.030e-7570.49NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA3.100e-6764.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2E835_TRICV2.290e-6471.70Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9D2Y8_9STRA4.090e-6462.37NifU domain-containing protein n=1 Tax=Nannochloro... [more]
W7TNI1_9STRA3.770e-6361.70Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S1H4I0_9STRA4.510e-6361.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1G1H4_9STRA1.960e-6259.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2C848_9STRA9.010e-6268.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1D6Z8_CYCTE1.690e-6067.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1088contigS-firma_F_contig1088:2052..6650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FRC2
Preferred nameNIFU1
PFAMsNifU
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Evalue6.58e-133
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
EC6.1.1.6
DescriptionNFU1 iron-sulfur cluster scaffold
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionNifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V)
Ec32 orthologEc-26_002610.1
Exons4
Model size2335
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1088.1165.1prot_S-firma_F_contig1088.1165.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1088 2164..5243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4679902-UTR-S-firma_F_contig1088:2051..21631622815631.4679902-UTR-S-firma_F_contig1088:2051..2163Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 2052..2163 +
1696949466.6210945-UTR-S-firma_F_contig1088:2051..21631696949466.6210945-UTR-S-firma_F_contig1088:2051..2163Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 2052..2163 +
1622815631.5368373-UTR-S-firma_F_contig1088:5243..66501622815631.5368373-UTR-S-firma_F_contig1088:5243..6650Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 5244..6650 +
1696949466.6898785-UTR-S-firma_F_contig1088:5243..66501696949466.6898785-UTR-S-firma_F_contig1088:5243..6650Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1088 5244..6650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4844499-CDS-S-firma_F_contig1088:2163..25731622815631.4844499-CDS-S-firma_F_contig1088:2163..2573Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 2164..2573 +
1696949466.6335533-CDS-S-firma_F_contig1088:2163..25731696949466.6335533-CDS-S-firma_F_contig1088:2163..2573Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 2164..2573 +
1622815631.500989-CDS-S-firma_F_contig1088:3795..39761622815631.500989-CDS-S-firma_F_contig1088:3795..3976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 3796..3976 +
1696949466.6417966-CDS-S-firma_F_contig1088:3795..39761696949466.6417966-CDS-S-firma_F_contig1088:3795..3976Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 3796..3976 +
1622815631.5135841-CDS-S-firma_F_contig1088:4487..45891622815631.5135841-CDS-S-firma_F_contig1088:4487..4589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 4488..4589 +
1696949466.660101-CDS-S-firma_F_contig1088:4487..45891696949466.660101-CDS-S-firma_F_contig1088:4487..4589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 4488..4589 +
1622815631.5268774-CDS-S-firma_F_contig1088:5120..52431622815631.5268774-CDS-S-firma_F_contig1088:5120..5243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 5121..5243 +
1696949466.671519-CDS-S-firma_F_contig1088:5120..52431696949466.671519-CDS-S-firma_F_contig1088:5120..5243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1088 5121..5243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1088.1165.1

>prot_S-firma_F_contig1088.1165.1 ID=prot_S-firma_F_contig1088.1165.1|Name=mRNA_S-firma_F_contig1088.1165.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=272bp
MRSASFVGGCVVAAAAVASLQASPAGAFAPPAFVPSGPASLSNCRSCSST
SSAVPRASSGSSSSGSTSSPRQQTRGWGARGIGVTRMSSTDIESPFATPG
MADMGEGEEDKDALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVV
RLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELNVEN
VEKVLDGVRPFLSVAGGSIKIQSLTGVSSIQPVVTLKMTGSSASLKSIRM
EIMQRIQREFMMSSLRVEFAP*
back to top

mRNA from alignment at S-firma_F_contig1088:2052..6650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1088.1165.1 ID=mRNA_S-firma_F_contig1088.1165.1|Name=mRNA_S-firma_F_contig1088.1165.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4599bp|location=Sequence derived from alignment at S-firma_F_contig1088:2052..6650+ (Sphaerotrichia firma ET2_F female)
GGAAGGTTTTCAGCGGCTAGGCGTTTCTCGGTTGCTCTTTGAGCTCTTCC
GGCGAGGCGGCGCTTTTTATCCAGCAAGCACCACCTGTTGTGTGTCAACA
CACACCTACACCATGAGGAGCGCGAGTTTCGTTGGAGGATGCGTGGTGGC
AGCAGCAGCAGTGGCCTCGCTCCAGGCCTCTCCAGCGGGGGCCTTCGCAC
CCCCCGCCTTCGTCCCGTCTGGCCCAGCGTCGCTTTCGAATTGCCGCTCA
TGCTCGTCGACATCATCAGCGGTGCCTCGAGCCAGCAGCGGCAGCAGCAG
CAGCGGCAGCACATCATCGCCGCGGCAACAAACCCGGGGGTGGGGGGCGA
GGGGTATCGGCGTGACGCGTATGTCGTCGACGGACATCGAATCTCCGTTT
GCAACGCCGGGCATGGCGGATATGGGGGAGGGGGAGGAGGACAAGGACGC
GCTGCTGACGCTCACGCTGGAGAACGTGGAGACGGTGCTGGATGAGATGC
GACCGTACCTCATGTCGGACGGGTGAGAGAACGATGGCATTTTGGCTGCC
GTGTGGTGGTGGTACTTGTTTACGCGTGTGTGCAGGTAGGATGTGTGTAT
ATATGGGTGTTTGCATTGACGCGCACCTACGCACACTGGAAATGGTGAGA
GCGGTGAGGCAGGCAGAAGTTGCATTGAACTTGTTCATGTCGTTCGGTCT
GGCGTCTGGCGGGATGTTTCGCTAGACGGACATGTATGTATGGATCAACG
AGAGACAACCTCGAAAAGTGCCGCCCCCCCGCCTCTGTTTGCTGGCCGAT
GTTGCGTTTCTTGGCAGCATAGTCTATGATACTCCTCATGAATTTTAGGC
TCCTGATGTCGCAAGTCTGATCCGAGATTCCCCGGTCCATCGCTGCTCGG
TGCTTGCGTGCTTGCTAAAGTTGACTCCATTAGAAAGTAGTAGTCCGGTG
GGGCACCGACTGCCAACTGGGTATCTGGCACCGACTGGTTTTCAATACGA
AACGAAGTGAAAAGCACCAAGCATGGCACGCAATCAGTCGTTGGCACAGA
GAGTGCGTCCGAGTTGAAACAACAAGTGCTTCGCGACCACCATTCACGAT
TTTCGTAAAATCAGAGTAAAATCTTAAGTGCTGCGGCTGCTATCGGTGTA
GGTTGCTGTCCGGTTTGGCCTCTCACAACCAGTCGGCTTCACCTCACTCT
GCCCCACAGCAACGTACCTTTGCACTAGAGCAGTAATCGCCCAGACAAAC
CCGAAACGAAAAAGCACGCGGACCTTGTTTGCGCCAATCGGCAGGCGCCG
TCGTACTGCAGTACAGTAGTTTCGCGCTTTCGCTGGAATGTGTGCGATTG
ACATGTCGCGTCGTCGGCAGCGTTTCGATGTACCTCGGAAGCACGGCTGT
AGTATTGCGGTTGGTGTGGTCAGTTTTTTTTTTGGTCACGGGCTTCGTGC
TGAAGCCCCCGCAAGTGGACCCTGTCATGCATAATCGTCCAGACTAGGAG
CCTCCGTGTGCTCAAGGCTTGCACACAATGTATGATACACCCCGCACCAG
GCCAGGTTTACCGCGACATACAGAGTGATGAGTTGCGCCAACACGGCTTT
TCTCTTGTAGACCCCGCCAGATTTGGTGGGGGGCGGAACGAAGCCCTTGA
TTTTGACGCGCACACACACCGTTGCCCTTCCCTTCTCCTGCGCACCCCCC
TCCGGCTTGCTGTCGCTCTTTCGCCGTTTATTCCCCATCACCAGCGGAAA
TGTGCGTGTTGTGGAGATCGATGGGCCAGTGGTGCGCCTTGAGTTGGAGG
GCGCGTGCGGCAGCTGCCCTTCTAGCACCATGACCATGAAGATGGGGCTG
GAGAGGCGCCTGGTGCAGCGCATTCCGGAGATCAGCGAGGTGGTGCAGTC
CATCCCCAACGGGCCGGAGTTGAACGTGAGCGGCCCGATCGATCAAGGAA
TCATTAGAGTAGTGTTTTCGACCAGGTTAGGCCAGGGACGCGTGGTGTGT
CATTTTAGTAGTCAAAGGTGCCGCATATATCAAGACGGCTACGGTATGGT
GCCGACGTCGTTCGTGTCACTCTCATTGCTCCGAGAGAGCTCAAGGAGAA
GTGCGAGCATTGCGGGAACCCGGGGGGCAGGAAATAGGCAGGCCCGTGTC
TGTCGTAGTGGTTATGGTCATGGTCATGGTCGTGTGGATTCTGTTTTCTG
GGTTCGCGTGCCTAGTACCGGACGGCATGTTTTCTTGTGATATTGGGGAG
CTTGGCGATGCTTTTAGTTTTGGCCTGGCTGATGGTTCTTTTTCCGGGCA
CTGCTGTCGTCGCGTCCAGTGCGGAGCACAAGTCCGACACAGTCTTTGCT
ACCACTCATGGTGAATTGGTGGGTAGACGGACTGATTTACCACCCCCCTT
TTTTTATTTTCTATCACGCGTATTTAACGAAAACAGGTCGAGAATGTGGA
AAAAGTGTTGGATGGGGTACGACCGTTTCTGAGCGTGGCAGGGGGAAGCA
TCAAGATCCAATCCCTGACGGGGGTTTCTTCCATTCAGGTGAGCTTCTCT
CTAGTATCCACTGCCGAACGGCCGTATTGCTCATGACTTTGTTTTTTTGT
TTTTTGTTTTCGGTTTTGCACGTCAAGCACAGCAGTTGTGCTTTTTGTCT
ACCAGTTATATTTTTTTGGGAGCTAAGTCGTGATGAACGTAAAATGAAGT
CCACCCACACGAAATTCGAAGACACCTCTATCATTACTTGTACTTCAATA
TGACTTCCACGATATGTTTGGTGCGAAGGTGGGTGGGTTTCATCCTCGAT
GCAGGTGCTAGACGCAGTTGTTGCAGAGAAGGGTTCTAACTACTCTGTGC
GCGATGACTACTGTATTCCGTACAGCGGTATGCCAACGCAGCGGCATTTA
TTGCCATCTCATGGCCTCCAGCGTCTAGTGTTTGGTGTGATGATCCCCGG
CGGTGTTGACGCTCTCTGCGTCGCCTTTTGATTAATGTCCTTGGAGATCA
AGGGATGTTTTGCTCATGATATCCCGCCGCACCCCATCCCCCCGCCACGC
CCGCATTGCAAACTTGTAGCCGGTGGTGACGCTGAAGATGACGGGTTCGA
GCGCCAGCCTCAAGTCCATCAGGATGGAGATCATGCAGCGAATCCAGCGG
GAGTTCATGATGTCCTCCTTGAGAGTAGAGTTCGCCCCATGAAGTTTTCG
AAGCATGCACACTCGAATGATGTTTCGCGTCAAGGCTTTTGAGTCCGAAC
GTTGCTGGCTCGGTGGGTTGAAAGCACCGCAATGGCACTACAGGACGTTG
GAAAGGAAGCATCTTGTTTTTGTCCCATAATTTTGGTTTCTTTTGTGGCT
TGGCTAAATCGGCTAGAAGCTGGCTGTTATGTCGGTCCTCTCAGGAGCAA
AGTAGAGGCCCTTCGTGATGTCGAGAGAGAGACCCAATCCAATCGTTTAG
CGTCCGCTTCAGTGGATGATGAAGAGGGTGTTACGGCAAATATCTATTTT
GCTGGTTTTTCTTGCTTGGATATCGGGCTGTGCGAAGCCCGGTGCTGTGT
TTGCTCAAGTTTTGTCCTTCTTTCGTGGGTGGAGACCGGCTTGTCTTGAT
CGTCGTGAAGTGCGCTGACCCTGATGATTCGATACATTTAGCTAACCGTG
TGCGCTGGGTAATTAACAAGTTCACACCGGGAGTGTTCGAGCCCGACTGG
CTTTCAAGAGAAAGGGAAGGGTTCGAGACAGCAGTCAGCCGGAAAACGAA
TTGATGCGAAAGTACGCAATCGCTCAGCGTTTTGTTTTGCTTTGGCATCT
TATGTTATGTTGTTATATTCCTTCGTTGTGTGTTACTCCGGGGTATTTCT
TTTGATGTCGCTCTCCTGCTGATGCCGGCCCCAGCGGTCGGCTGCATGAG
TTTGTGCCGCACGTTGCCCCTCGGTGGAATACGGGTGGCCGGACGCGCGG
ACTAGAAGCATCGCCGATGTCGAGTAGTGCTGGTGCTGCATGGGTCGGGC
GGCGAGAAACAGAGATAAAGGATGAGAGGCTTCATGTGTGGTGAGGTATT
CGGCAACTACATGGAGCTACTCTAACAGCGCGAGCGTGAAGCCTGAGGTG
ATGGTCCAGCAATAGGTCGTCGTTGAGGAGGGGTTATCGGCACTTATGGC
TTTTGCTTGCATAAGAGTTCTCGAAGGGAGCAAATCGTTGCTATTTCCGA
CCGAGTGCCGATAGACTTTGATGATGCGGCTGGCTTGAGGTGGGTATTTC
CGCACGCGGCAAAGCGGTAGCGGGGACCTGCATGGGAATGGGAAGGCCCA
TTGCGATGAACTACTGCTGTCGGAACAGAACCCCAACGGCAGTTGTTGAC
GAACAGCATGACGGGGAAAGGTGTACCGTCAAGGCGTTGCACTCTGCGTT
TCGTGTTGCTTGCGGGTGGCCATCGACATCCGTAGCAGAGGTAAACAACT
ACCATCTTCATCAAGCCACCAAGTATGTAGGCTTGGGTGGTTTTGCTTGA
GCCCGATATACTACATACAACGTAGCTTTTCTCAGTTGCGGAACCGCATG
GATGTTACGATGTATGTTCCCTGGTACGCTTGCCAAAACTCCACGCGGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1088:2052..6650+

>mRNA_S-firma_F_contig1088.1165.1 ID=mRNA_S-firma_F_contig1088.1165.1|Name=mRNA_S-firma_F_contig1088.1165.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1632bp|location=Sequence derived from alignment at S-firma_F_contig1088:2052..6650+ (Sphaerotrichia firma ET2_F female)
ATGAGGAGCGCGAGTTTCGTTGGAGGATGCGTGGTGGCAGCAGCAGCAGT
GGCCTCGCTCCAGGCCTCTCCAGCGGGGGCCTTCGCACCCCCCGCCTTCG
TCCCGTCTGGCCCAGCGTCGCTTTCGAATTGCCGCTCATGCTCGTCGACA
TCATCAGCGGTGCCTCGAGCCAGCAGCGGCAGCAGCAGCAGCGGCAGCAC
ATCATCGCCGCGGCAACAAACCCGGGGGTGGGGGGCGAGGGGTATCGGCG
TGACGCGTATGTCGTCGACGGACATCGAATCTCCGTTTGCAACGCCGGGC
ATGGCGGATATGGGGGAGGGGGAGGAGGACAAGGACGCGCTGCTGACGCT
CACGCTGGAGAACGTGGAGACGGTGCTGGATGAGATGCGACCGTACCTCA
TGTCGGACGGATGAGGAGCGCGAGTTTCGTTGGAGGATGCGTGGTGGCAG
CAGCAGCAGTGGCCTCGCTCCAGGCCTCTCCAGCGGGGGCCTTCGCACCC
CCCGCCTTCGTCCCGTCTGGCCCAGCGTCGCTTTCGAATTGCCGCTCATG
CTCGTCGACATCATCAGCGGTGCCTCGAGCCAGCAGCGGCAGCAGCAGCA
GCGGCAGCACATCATCGCCGCGGCAACAAACCCGGGGGTGGGGGGCGAGG
GGTATCGGCGTGACGCGTATGTCGTCGACGGACATCGAATCTCCGTTTGC
AACGCCGGGCATGGCGGATATGGGGGAGGGGGAGGAGGACAAGGACGCGC
TGCTGACGCTCACGCTGGAGAACGTGGAGACGGTGCTGGATGAGATGCGA
CCGTACCTCATGTCGGACGGCGGAAATGTGCGTGTTGTGGAGATCGATGG
GCCAGTGGTGCGCCTTGAGTTGGAGGGCGCGTGCGGCAGCTGCCCTTCTA
GCACCATGACCATGAAGATGGGGCTGGAGAGGCGCCTGGTGCAGCGCATT
CCGGAGATCAGCGAGGTGGTGCAGTCCATCCCCAACGGGCCGGAGTTGAA
CCGGAAATGTGCGTGTTGTGGAGATCGATGGGCCAGTGGTGCGCCTTGAG
TTGGAGGGCGCGTGCGGCAGCTGCCCTTCTAGCACCATGACCATGAAGAT
GGGGCTGGAGAGGCGCCTGGTGCAGCGCATTCCGGAGATCAGCGAGGTGG
TGCAGTCCATCCCCAACGGGCCGGAGTTGAACGTCGAGAATGTGGAAAAA
GTGTTGGATGGGGTACGACCGTTTCTGAGCGTGGCAGGGGGAAGCATCAA
GATCCAATCCCTGACGGGGGTTTCTTCCATTCAGGTCGAGAATGTGGAAA
AAGTGTTGGATGGGGTACGACCGTTTCTGAGCGTGGCAGGGGGAAGCATC
AAGATCCAATCCCTGACGGGGGTTTCTTCCATTCAGCCGGTGGTGACGCT
GAAGATGACGGGTTCGAGCGCCAGCCTCAAGTCCATCAGGATGGAGATCA
TGCAGCGAATCCAGCGGGAGTTCATGATGTCCTCCTTGAGAGTAGAGTTC
GCCCCATGACCGGTGGTGACGCTGAAGATGACGGGTTCGAGCGCCAGCCT
CAAGTCCATCAGGATGGAGATCATGCAGCGAATCCAGCGGGAGTTCATGA
TGTCCTCCTTGAGAGTAGAGTTCGCCCCATGA
back to top