prot_S-firma_F_contig1084.1128.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1084.1128.1
Unique Nameprot_S-firma_F_contig1084.1128.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length1234
Homology
BLAST of mRNA_S-firma_F_contig1084.1128.1 vs. uniprot
Match: D8LEV6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEV6_ECTSI)

HSP 1 Score: 563 bits (1450), Expect = 5.110e-176
Identity = 639/1130 (56.55%), Postives = 695/1130 (61.50%), Query Frame = 0
Query:  181 DYASMAXXXXXXXXXXXXVGSAFPLRSSGSASGRGRFMSSPPPIHANGAIGRPIPAAVSAGKDYASLAGGLPAAGASRGSGMGXXXXXXXXXXGVDRRSGSSSAGYADQARDVRSAGRALGAAISSRQSDGPSRSSGRGXXXXXXXRFDRA--GSKAPPSPPGRDQFGRERDWRGSAPNGRRQGASPPNGQPPPVVHGSGFGTFSMALANSGXXXXXXXXXXXAAPRASSSTPGRDSRSPLGGRXXXXXXXXX---PSGRSDQVREHISRNQANGDLRQGLS-SEGRDQADTRSKTSQDRGKRDGSNDQRRDSQPPSKQSDRPKSXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------AVPATGATSS---KTLSDRSKSPH-RGPGAANAVGGDGKNGAPPPRSXXXXXSPRHGTVNGNASGSGSG--KMAGGSGVGTLAGLAPAVDRPSSRDGNPSGENDNNRPPHKTXXXXXXXXXXXXXXXXXXXXXXXXXXNGGPPAERERDRPPRPYPRLGLGQGLLARSNNVPAXXXXXXAGDTGSGNQNGGEPSXXXXXXRPHAEELSERERE-RDGWKRDGYRAGGV-DSHRPSSGXXXXXXXXSDRGGAYRGNGNGVGG---GLPGGRGVVRERDRPDSPRDRGSRYNPTPPQPPPLPSSAEHSLGTGTLSIAARRSSLGYHHIGGRGXXXXXXXXGDWQDK--GPRVSHMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSREQDFQKQEFRGGPNHADSRNDSRNHRPGWDGRSTPPGDPSSSRYAME---PGGGTHSRHQHQQGMHPLPNGPGXXXXXXXXXXXQQNPPRHXXXXXXXXXXXXXXXPSSSSGA------GRLGRSTSHPTMPLERGE--SRLGPNVHQHQGRGSPLGDGXXXXXXXXXXXXXXXXXXXXPRRXXXXXXXXXXXXXXXXXXXXXLSMHTSSPLGMXXXXXXXXXXSASAATRGGDRGWGHAAGGEXXXXXXXXXXXXXXXXXDAESNGWGGAVRRQRAPVVTDRLISLKAEFLELHDMLLESDFQWEESQRFCEVLKMQLDQLMLVPHRHRDSLAPP 1232
            DYASMA              +AFPLR+ GS  GRGRFMSSP  +HANGA+ RP+PAAVSAGKDYASLA GLP  G+ RGS  GXXXXXXXXXX           GYADQARDVR+AGRALGAAIS R++D  SR +   XXXXXXX        SKAPPSPPGRDQFGRERDWR SA NGRRQGASPPNGQPP VVHGSGFGTFSMAL NS             + R SSSTPGRDSRSP+G R  XXXXXX    P  R+D VR H SR Q    L++G S  +GR Q    +   + R      + +RRD Q  +  SD    XXXXXXXXXXXXXXXXXXXXXXXX                                                A P+T   S+   KT SD SKSPH  GP  A A      NGAP P       SP   + NG          KMAGGSG+GTLAGL P +DRP                    XXXXXXXXXXXXXXXXXXXXXXX   NGGPPAERE DRP RP+PRLGLG+GLLAR  N PA      +   GS NQNG E S      RP   +L ER+ + R+ WKRDGYRAGG  DSHRPS G         DRGG YRGNG+        LPGGRGVVRERDRPDSPRDRG RYNPTPPQPPPL SSAEHS G+GTLS++ARR+SLGY   GGR         GDWQD+  G     MG XXXXXXXXXX                            RG R Q+F KQ+FRG  N+ADSRN    HRPGWDGRSTPPGDPSS RYAME    GGG H+RHQHQQGMHPL NGPGXXXXXXXXXXX       XXXXXXXXXXXXXXX             GRLGR+T HP M  ERG    RLGPN HQ+  RGSPL  G     XXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXX    LSMH++SPL +          S     +GG+ G G AA G+     XXXXXXXXXXXX              R PV+TDRLISLKAEFLELHDML+ESDFQWEESQRFCEVLK+QLDQLMLVPHRHR+S+A P
Sbjct:  194 DYASMASMSSPSGGGVNN--NAFPLRNPGSVPGRGRFMSSPSSLHANGAVARPMPAAVSAGKDYASLASGLPPGGSGRGSVAGXXXXXXXXXXXX---------GYADQARDVRNAGRALGAAISGRRADSLSRGNXXXXXXXXXXXXXXXXXSSKAPPSPPGRDQFGRERDWRSSASNGRRQGASPPNGQPP-VVHGSGFGTFSMALGNSSGEGATGVAPSKLSSR-SSSTPGRDSRSPVGSRGGXXXXXXPTAAPPTRADLVRAHSSR-QRQRQLQEGASLQDGRKQKQVNNVDQRQR-----LSPERRD-QAENHASDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSTAFASAPGKKTSSDGSKSPHPAGPSTAVAAPVQENNGAPTP------LSPSRHSSNGXXXXXXXXXXKMAGGSGLGTLAGLTPTMDRPPXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVNGGPPAERESDRP-RPHPRLGLGEGLLAR--NEPAGGDSEVSTQGGS-NQNGRESSGGR---RPSVVDLQERDADGRNAWKRDGYRAGGPGDSHRPSMGGGDRGVG-GDRGGPYRGNGHXXXXXXXSLPGGRGVVRERDRPDSPRDRG-RYNPTPPQPPPLMSSAEHSHGSGTLSVSARRASLGYPLGGGRNG-------GDWQDRNAGGMPGQMGGXXXXXXXXXXYKRPRSPEPVAMDLEEDSPSPP------RG-RGQEFLKQDFRGN-NYADSRN----HRPGWDGRSTPPGDPSS-RYAMEGGGSGGGNHARHQHQQGMHPLANGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGRLGRTTGHPPMHPERGGVGPRLGPNAHQN--RGSPLVGGSVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRSPLSMHSASPLALGPHGSRSSPVSGQ---KGGEEGRGSAAAGDGDSVAXXXXXXXXXXXXXXXXXX--------RPPVITDRLISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHRESMASP 1245          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1084.1128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEV6_ECTSI5.110e-17656.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 176..1233
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 160..167
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 168..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..159
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..175
NoneNo IPR availableTMHMMTMhelixcoord: 129..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1084contigS-firma_F_contig1084:12939..25250 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1084.1128.1mRNA_S-firma_F_contig1084.1128.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1084 12014..25474 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1084.1128.1 ID=prot_S-firma_F_contig1084.1128.1|Name=mRNA_S-firma_F_contig1084.1128.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1234bp
MNRRQGGVPKGGYGSLACAPARRRSRSRSRSRSPPSSASSSSGRSRSRST
RSSRERARRRRRRRRRRSRSESSSSSDSSSSSSSGSRGSSRRRGSTHSSS
RAARGGGGLPMASAHFGGGGKLAGAGGNGLMGMPMGMGMGMGMGMAMGMP
MGMGPMGMMAMGGGVGAGMGGMGVAAGGGKDYASMASSGGGGGGGGGGVG
SAFPLRSSGSASGRGRFMSSPPPIHANGAIGRPIPAAVSAGKDYASLAGG
LPAAGASRGSGMGGGGGGGGGSGGVDRRSGSSSAGYADQARDVRSAGRAL
GAAISSRQSDGPSRSSGRGGGGGGGGRFDRAGSKAPPSPPGRDQFGRERD
WRGSAPNGRRQGASPPNGQPPPVVHGSGFGTFSMALANSGGGGGSSVSSS
KAAPRASSSTPGRDSRSPLGGRGGSGGAGSAPSGRSDQVREHISRNQANG
DLRQGLSSEGRDQADTRSKTSQDRGKRDGSNDQRRDSQPPSKQSDRPKSS
SSGRGGGGGGGSDARGNKTAAAAAVPATGATSSKTLSDRSKSPHRGPGAA
NAVGGDGKNGAPPPRSSSSSSSPRHGTVNGNASGSGSGKMAGGSGVGTLA
GLAPAVDRPSSRDGNPSGENDNNRPPHKTSSPPRRGASSSNGGGSGSGGG
VGSAANGGPPAERERDRPPRPYPRLGLGQGLLARSNNVPAGGGGGGAGDT
GSGNQNGGEPSGDRGGGRPHAEELSERERERDGWKRDGYRAGGVDSHRPS
SGGGGGGGGGSDRGGAYRGNGNGVGGGLPGGRGVVRERDRPDSPRDRGSR
YNPTPPQPPPLPSSAEHSLGTGTLSIAARRSSLGYHHIGGRGGGGGGVGG
GDWQDKGPRVSHMGAGGGGGGGGRGGGGGGYKRPRSPEPVAMDLDEDSPS
PPPRGSREQDFQKQEFRGGPNHADSRNDSRNHRPGWDGRSTPPGDPSSSR
YAMEPGGGTHSRHQHQQGMHPLPNGPGGGGGGGGGGWGQQNPPRHHPYRN
SPGGGGGGGAPSSSSGAGRLGRSTSHPTMPLERGESRLGPNVHQHQGRGS
PLGDGGGGGGGGSSSRGSPLAPPPPPRRGSPMTPGQSGGGGEGGPRGSPL
SMHTSSPLGMGSQGGPRSSPSASAATRGGDRGWGHAAGGERGGGHGGGGG
GAAAAGGDAESNGWGGAVRRQRAPVVTDRLISLKAEFLELHDMLLESDFQ
WEESQRFCEVLKMQLDQLMLVPHRHRDSLAPPR*
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