mRNA_S-firma_F_contig1084.1128.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1084.1128.1 vs. uniprot
Match: D8LEV6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEV6_ECTSI) HSP 1 Score: 563 bits (1452), Expect = 1.030e-172 Identity = 639/1130 (56.55%), Postives = 695/1130 (61.50%), Query Frame = 3
Query: 765 DYASMAXXXXXXXXXXXXVGSAFPLRSSGSASGRGRFMSSPPPIHANGAIGRPIPAAVSAGKDYASLAGGLPAAGASRGSGMGXXXXXXXXXXGVDRRSGSSSAGYADQARDVRSAGRALGAAISSRQSDGPSRSSGRGXXXXXXXRFDRA--GSKAPPSPPGRDQFGRERDWRGSAPNGRRQGASPPNGQPPPVVHGSGFGTFSMALANSGXXXXXXXXXXXAAPRASSSTPGRDSRSPLGGRXXXXXXXXX---PSGRSDQVREHISRNQANGDLRQGLS-SEGRDQADTRSKTSQDRGKRDGSNDQRRDSQPPSKQSDRPKSXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------AVPATGATSS---KTLSDRSKSPH-RGPGAANAVGGDGKNGAPPPRSXXXXXSPRHGTVNGNASGSGSG--KMAGGSGVGTLAGLAPAVDRPSSRDGNPSGENDNNRPPHKTXXXXXXXXXXXXXXXXXXXXXXXXXXNGGPPAERERDRPPRPYPRLGLGQGLLARSNNVPAXXXXXXAGDTGSGNQNGGEPSXXXXXXRPHAEELSERERE-RDGWKRDGYRAGGV-DSHRPSSGXXXXXXXXSDRGGAYRGNGNGVGG---GLPGGRGVVRERDRPDSPRDRGSRYNPTPPQPPPLPSSAEHSLGTGTLSIAARRSSLGYHHIGGRGXXXXXXXXGDWQDK--GPRVSHMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSREQDFQKQEFRGGPNHADSRNDSRNHRPGWDGRSTPPGDPSSSRYAME---PGGGTHSRHQHQQGMHPLPNGPGXXXXXXXXXXXQQNPPRHXXXXXXXXXXXXXXXPSSSSGA------GRLGRSTSHPTMPLERGE--SRLGPNVHQHQGRGSPLGDGXXXXXXXXXXXXXXXXXXXXPRRXXXXXXXXXXXXXXXXXXXXXLSMHTSSPLGMXXXXXXXXXXSASAATRGGDRGWGHAAGGEXXXXXXXXXXXXXXXXXDAESNGWGGAVRRQRAPVVTDRLISLKAEFLELHDMLLESDFQWEESQRFCEVLKMQLDQLMLVPHRHRDSLAPP 3920
DYASMA +AFPLR+ GS GRGRFMSSP +HANGA+ RP+PAAVSAGKDYASLA GLP G+ RGS GXXXXXXXXXX GYADQARDVR+AGRALGAAIS R++D SR + XXXXXXX SKAPPSPPGRDQFGRERDWR SA NGRRQGASPPNGQPP VVHGSGFGTFSMAL NS + R SSSTPGRDSRSP+G R XXXXXX P R+D VR H SR Q L++G S +GR Q + + R + +RRD Q + SD XXXXXXXXXXXXXXXXXXXXXXXX A P+T S+ KT SD SKSPH GP A A NGAP P SP + NG KMAGGSG+GTLAGL P +DRP XXXXXXXXXXXXXXXXXXXXXXX NGGPPAERE DRP RP+PRLGLG+GLLAR N PA + GS NQNG E S RP +L ER+ + R+ WKRDGYRAGG DSHRPS G DRGG YRGNG+ LPGGRGVVRERDRPDSPRDRG RYNPTPPQPPPL SSAEHS G+GTLS++ARR+SLGY GGR GDWQD+ G MG XXXXXXXXXX RG R Q+F KQ+FRG N+ADSRN HRPGWDGRSTPPGDPSS RYAME GGG H+RHQHQQGMHPL NGPGXXXXXXXXXXX XXXXXXXXXXXXXXX GRLGR+T HP M ERG RLGPN HQ+ RGSPL G XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX LSMH++SPL + S +GG+ G G AA G+ XXXXXXXXXXXX R PV+TDRLISLKAEFLELHDML+ESDFQWEESQRFCEVLK+QLDQLMLVPHRHR+S+A P
Sbjct: 194 DYASMASMSSPSGGGVNN--NAFPLRNPGSVPGRGRFMSSPSSLHANGAVARPMPAAVSAGKDYASLASGLPPGGSGRGSVAGXXXXXXXXXXXX---------GYADQARDVRNAGRALGAAISGRRADSLSRGNXXXXXXXXXXXXXXXXXSSKAPPSPPGRDQFGRERDWRSSASNGRRQGASPPNGQPP-VVHGSGFGTFSMALGNSSGEGATGVAPSKLSSR-SSSTPGRDSRSPVGSRGGXXXXXXPTAAPPTRADLVRAHSSR-QRQRQLQEGASLQDGRKQKQVNNVDQRQR-----LSPERRD-QAENHASDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSTAFASAPGKKTSSDGSKSPHPAGPSTAVAAPVQENNGAPTP------LSPSRHSSNGXXXXXXXXXXKMAGGSGLGTLAGLTPTMDRPPXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVNGGPPAERESDRP-RPHPRLGLGEGLLAR--NEPAGGDSEVSTQGGS-NQNGRESSGGR---RPSVVDLQERDADGRNAWKRDGYRAGGPGDSHRPSMGGGDRGVG-GDRGGPYRGNGHXXXXXXXSLPGGRGVVRERDRPDSPRDRG-RYNPTPPQPPPLMSSAEHSHGSGTLSVSARRASLGYPLGGGRNG-------GDWQDRNAGGMPGQMGGXXXXXXXXXXYKRPRSPEPVAMDLEEDSPSPP------RG-RGQEFLKQDFRGN-NYADSRN----HRPGWDGRSTPPGDPSS-RYAMEGGGSGGGNHARHQHQQGMHPLANGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGRLGRTTGHPPMHPERGGVGPRLGPNAHQN--RGSPLVGGSVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRSPLSMHSASPLALGPHGSRSSPVSGQ---KGGEEGRGSAAAGDGDSVAXXXXXXXXXXXXXXXXXX--------RPPVITDRLISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHRESMASP 1245 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1084.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1084.1128.1 >prot_S-firma_F_contig1084.1128.1 ID=prot_S-firma_F_contig1084.1128.1|Name=mRNA_S-firma_F_contig1084.1128.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1234bp MNRRQGGVPKGGYGSLACAPARRRSRSRSRSRSPPSSASSSSGRSRSRSTback to top mRNA from alignment at S-firma_F_contig1084:12014..25474- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1084.1128.1 ID=mRNA_S-firma_F_contig1084.1128.1|Name=mRNA_S-firma_F_contig1084.1128.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=13461bp|location=Sequence derived from alignment at S-firma_F_contig1084:12014..25474- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1084:12014..25474- >mRNA_S-firma_F_contig1084.1128.1 ID=mRNA_S-firma_F_contig1084.1128.1|Name=mRNA_S-firma_F_contig1084.1128.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=7404bp|location=Sequence derived from alignment at S-firma_F_contig1084:12014..25474- (Sphaerotrichia firma ET2_F female)back to top |