prot_S-firma_F_contig10834.1120.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10834.1120.1
Unique Nameprot_S-firma_F_contig10834.1120.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length126
Homology
BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Match: UPI0003F0D55B (uncharacterized protein LOC102805012 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D55B)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-5
Identity = 34/108 (31.48%), Postives = 55/108 (50.93%), Query Frame = 0
Query:   21 RYTVALGGCNGVEVHGYP------PVAEQSPVSVLHSFAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETAARVTSVAVAHDDTLVAFATWDG 122
            +Y +A+ G NGVE++ Y        +A+   V +     IATL +S +   LA+AA DGH G+W+T     +     W   ++    R+T++A + D   V  + WDG
Sbjct:  123 QYCIAVAGPNGVEIYKYIMIDDWCQIADDDVVPLHVELPIATLKYSSNSKYLAVAAMDGHFGVWKTDAEPMEEHKDFWFLHLKTL--RITNIAFSEDSCKVGVSCWDG 228          
BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Match: UPI001CF1F4DA (uncharacterized protein LOC122947636 isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1F4DA)

HSP 1 Score: 50.8 bits (120), Expect = 9.050e-5
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 0
Query:   22 YTVALGGCNGVEVHGYP--PVAEQSPVSVLHS-FAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETAARVTSVAVAHDDTLVAFATWDG 122
            Y +A+ G NGVE+H        E    S LH+  AIA + FS     LA+AA DGH G+W TA   +D     W   ++    R+TS+  + D  +VA A W+G
Sbjct:  132 YCLAVAGPNGVELHSLEIGDNIETRVSSSLHADLAIALVEFSFDKEHLAVAALDGHFGVWSTASLETDQ-KEFWFVHLKTV--RITSIEFSPDSQMVAVACWEG 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0003F0D55B1.030e-531.48uncharacterized protein LOC102805012 n=1 Tax=Sacco... [more]
UPI001CF1F4DA9.050e-537.50uncharacterized protein LOC122947636 isoform X1 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..126
e-value: 5.3E-12
score: 47.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 50..78
e-value: 0.0018
score: 19.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 47..79
score: 10.609
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 66..80
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 47..126
score: 11.972
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10834contigS-firma_F_contig10834:3809..4186 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10834.1120.1mRNA_S-firma_F_contig10834.1120.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10834 3809..4186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10834.1120.1 ID=prot_S-firma_F_contig10834.1120.1|Name=mRNA_S-firma_F_contig10834.1120.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
DTISVVFEVKAVALTAMGGGRYTVALGGCNGVEVHGYPPVAEQSPVSVLH
SFAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETA
ARVTSVAVAHDDTLVAFATWDGAVRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf