mRNA_S-firma_F_contig10834.1120.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10834.1120.1
Unique NamemRNA_S-firma_F_contig10834.1120.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Match: UPI0003F0D55B (uncharacterized protein LOC102805012 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D55B)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-5
Identity = 34/108 (31.48%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:   61 RYTVALGGCNGVEVHGYP------PVAEQSPVSVLHSFAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETAARVTSVAVAHDDTLVAFATWDG 366
            +Y +A+ G NGVE++ Y        +A+   V +     IATL +S +   LA+AA DGH G+W+T     +     W   ++    R+T++A + D   V  + WDG
Sbjct:  123 QYCIAVAGPNGVEIYKYIMIDDWCQIADDDVVPLHVELPIATLKYSSNSKYLAVAAMDGHFGVWKTDAEPMEEHKDFWFLHLKTL--RITNIAFSEDSCKVGVSCWDG 228
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BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Match: UPI001CF1F4DA (uncharacterized protein LOC122947636 isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1F4DA)

HSP 1 Score: 50.8 bits (120), Expect = 9.050e-5
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:   64 YTVALGGCNGVEVHGYP--PVAEQSPVSVLHS-FAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETAARVTSVAVAHDDTLVAFATWDG 366
            Y +A+ G NGVE+H        E    S LH+  AIA + FS     LA+AA DGH G+W TA   +D     W   ++    R+TS+  + D  +VA A W+G
Sbjct:  132 YCLAVAGPNGVELHSLEIGDNIETRVSSSLHADLAIALVEFSFDKEHLAVAALDGHFGVWSTASLETDQ-KEFWFVHLKTV--RITSIEFSPDSQMVAVACWEG 232
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10834.1120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0003F0D55B1.030e-531.48uncharacterized protein LOC102805012 n=1 Tax=Sacco... [more]
UPI001CF1F4DA9.050e-537.50uncharacterized protein LOC122947636 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10834contigS-firma_F_contig10834:3809..4186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog45351.EDO32368
Max annot lvl33208|Metazoa
Evalue1.43e-07
EggNOG OGs2CZGJ@1|root,2SAAJ@2759|Eukaryota,3A992@33154|Opisthokonta,3BUX2@33208|Metazoa
DescriptionWD40 repeats
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.864572-CDS-S-firma_F_contig10834:3808..41861622815626.864572-CDS-S-firma_F_contig10834:3808..4186Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10834 3809..4186 -
1696949463.2830753-CDS-S-firma_F_contig10834:3808..41861696949463.2830753-CDS-S-firma_F_contig10834:3808..4186Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10834 3809..4186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10834.1120.1prot_S-firma_F_contig10834.1120.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10834 3809..4186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10834.1120.1

>prot_S-firma_F_contig10834.1120.1 ID=prot_S-firma_F_contig10834.1120.1|Name=mRNA_S-firma_F_contig10834.1120.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
DTISVVFEVKAVALTAMGGGRYTVALGGCNGVEVHGYPPVAEQSPVSVLH
SFAIATLAFSPSGALLAIAAADGHVGLWETAVFRSDTFPAAWHGEMQETA
ARVTSVAVAHDDTLVAFATWDGAVRL
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mRNA from alignment at S-firma_F_contig10834:3809..4186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10834.1120.1 ID=mRNA_S-firma_F_contig10834.1120.1|Name=mRNA_S-firma_F_contig10834.1120.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=378bp|location=Sequence derived from alignment at S-firma_F_contig10834:3809..4186- (Sphaerotrichia firma ET2_F female)
GACACCATTAGCGTCGTGTTTGAGGTCAAAGCCGTGGCCCTGACGGCGAT
GGGCGGCGGGCGGTACACGGTGGCCCTGGGGGGCTGCAACGGCGTGGAGG
TGCACGGGTACCCGCCGGTTGCGGAGCAGTCCCCCGTCAGCGTCCTGCAC
TCGTTTGCCATTGCCACCCTGGCGTTCAGCCCGTCCGGGGCGCTGCTTGC
CATTGCGGCTGCGGACGGCCACGTGGGGTTGTGGGAGACGGCCGTGTTTC
GCAGTGACACGTTCCCCGCGGCCTGGCACGGAGAAATGCAGGAGACTGCC
GCCCGCGTGACGTCCGTGGCCGTGGCACATGACGACACCCTGGTGGCGTT
TGCAACGTGGGATGGCGCGGTGCGGCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10834:3809..4186-

>mRNA_S-firma_F_contig10834.1120.1 ID=mRNA_S-firma_F_contig10834.1120.1|Name=mRNA_S-firma_F_contig10834.1120.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=756bp|location=Sequence derived from alignment at S-firma_F_contig10834:3809..4186- (Sphaerotrichia firma ET2_F female)
GACACCATTAGCGTCGTGTTTGAGGTCAAAGCCGTGGCCCTGACGGCGAT
GGGCGGCGGGCGGTACACGGTGGCCCTGGGGGGCTGCAACGGCGTGGAGG
TGCACGGGTACCCGCCGGTTGCGGAGCAGTCCCCCGTCAGCGTCCTGCAC
TCGTTTGCCATTGCCACCCTGGCGTTCAGCCCGTCCGGGGCGCTGCTTGC
CATTGCGGCTGCGGACGGCCACGTGGGGTTGTGGGAGACGGCCGTGTTTC
GCAGTGACACGTTCCCCGCGGCCTGGCACGGAGAAATGCAGGAGACTGCC
GCCCGCGTGACGTCCGTGGCCGTGGCACATGACGACACCCTGGTGGCGTT
TGCAACGTGGGATGGCGCGGTGCGGCTGGACACCATTAGCGTCGTGTTTG
AGGTCAAAGCCGTGGCCCTGACGGCGATGGGCGGCGGGCGGTACACGGTG
GCCCTGGGGGGCTGCAACGGCGTGGAGGTGCACGGGTACCCGCCGGTTGC
GGAGCAGTCCCCCGTCAGCGTCCTGCACTCGTTTGCCATTGCCACCCTGG
CGTTCAGCCCGTCCGGGGCGCTGCTTGCCATTGCGGCTGCGGACGGCCAC
GTGGGGTTGTGGGAGACGGCCGTGTTTCGCAGTGACACGTTCCCCGCGGC
CTGGCACGGAGAAATGCAGGAGACTGCCGCCCGCGTGACGTCCGTGGCCG
TGGCACATGACGACACCCTGGTGGCGTTTGCAACGTGGGATGGCGCGGTG
CGGCTG
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