prot_S-firma_F_contig10833.1119.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10833.1119.1
Unique Nameprot_S-firma_F_contig10833.1119.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length123
Homology
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BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Match: A0A087ULJ1_STEMI (p-selectin (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087ULJ1_STEMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-6
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:    5 CPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTCGV-GTWGRAPAVCLR-TCPRLPLPAGGE 76
            CP +T   V    +S  C +  +G  CT TCQSGY+L  GS ++ C   G W     +C   +CP LP PA G 
Sbjct:  127 CPAIT---VDQGIISETCSNAITGQTCTITCQSGYTLTGGSGTLVCQANGQWSGTLPICTAVSCPTLPAPASGS 197
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BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Match: UPI001C7224A3 (P-selectin isoform X1 n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C7224A3)

HSP 1 Score: 52.4 bits (124), Expect = 2.350e-5
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 0 
Query:    5 CPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTCGVGTWG----RAPAVCLRTCPRLPLPAGGE---ACVEGVV 83
            CPP+    V    LSG C+   +G  C+ TC+SGYSL   S  V    G W        AV  R+CP LP PA G    +C  G V
Sbjct:  243 CPPV---QVIRGILSGSCNAATTGQTCSVTCESGYSLSGTSTLVCQSNGEWSSVYPNCNAVQSRSCPALPSPANGGNSGSCNTGAV 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A087ULJ1_STEMI2.600e-639.19p-selectin (Fragment) n=1 Tax=Stegodyphus mimosaru... [more]
UPI001C7224A32.350e-539.53P-selectin isoform X1 n=3 Tax=Parasteatoda tepidar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000436Sushi/SCR/CCP domainSMARTSM00032CCP_2coord: 5..62
e-value: 0.0083
score: 25.3
IPR000436Sushi/SCR/CCP domainPFAMPF00084Sushicoord: 5..62
e-value: 8.8E-5
score: 23.0
IPR000436Sushi/SCR/CCP domainPROSITEPS50923SUSHIcoord: 3..64
score: 8.137
NoneNo IPR availableGENE3D2.10.70.10coord: 3..65
e-value: 2.5E-7
score: 32.9
IPR035976Sushi/SCR/CCP superfamilySUPERFAMILY57535Complement control module/SCR domaincoord: 20..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10833contigS-firma_F_contig10833:139..507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10833.1119.1mRNA_S-firma_F_contig10833.1119.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10833 139..507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10833.1119.1 ID=prot_S-firma_F_contig10833.1119.1|Name=mRNA_S-firma_F_contig10833.1119.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
FYARCPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTC
GVGTWGRAPAVCLRTCPRLPLPAGGEACVEGVVDFDFGTASLPTGWLASP
ETPSIRLEEVWYTLSGRLVAHPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035976Sushi/SCR/CCP_sf
IPR000436Sushi_SCR_CCP_dom