mRNA_S-firma_F_contig10833.1119.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10833.1119.1
Unique NamemRNA_S-firma_F_contig10833.1119.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Match: A0A087ULJ1_STEMI (p-selectin (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087ULJ1_STEMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-6
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 1 
Query:   13 CPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTCGV-GTWGRAPAVCLR-TCPRLPLPAGGE 228
            CP +T   V    +S  C +  +G  CT TCQSGY+L  GS ++ C   G W     +C   +CP LP PA G 
Sbjct:  127 CPAIT---VDQGIISETCSNAITGQTCTITCQSGYTLTGGSGTLVCQANGQWSGTLPICTAVSCPTLPAPASGS 197
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BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Match: UPI001C7224A3 (P-selectin isoform X1 n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C7224A3)

HSP 1 Score: 52.4 bits (124), Expect = 2.350e-5
Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 1 
Query:   13 CPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTCGVGTWG----RAPAVCLRTCPRLPLPAGGE---ACVEGVV 249
            CPP+    V    LSG C+   +G  C+ TC+SGYSL   S  V    G W        AV  R+CP LP PA G    +C  G V
Sbjct:  243 CPPV---QVIRGILSGSCNAATTGQTCSVTCESGYSLSGTSTLVCQSNGEWSSVYPNCNAVQSRSCPALPSPANGGNSGSCNTGAV 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10833.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A087ULJ1_STEMI2.600e-639.19p-selectin (Fragment) n=1 Tax=Stegodyphus mimosaru... [more]
UPI001C7224A32.350e-539.53P-selectin isoform X1 n=3 Tax=Parasteatoda tepidar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10833contigS-firma_F_contig10833:139..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog529818.AMSG_04442T0
PFAMsCUB,Filamin,Sushi
Max annot lvl2759|Eukaryota
KEGG koko:K06496,ko:K17495
KEGG Pathwayko04514,ko05144,ko05150,map04514,map05144,map05150
Evalue0.00017
EggNOG OGsKOG4297@1|root,KOG4297@2759|Eukaryota
Descriptioncarbohydrate binding
COG categoryS
BRITEko00000,ko00001,ko00536,ko01009,ko04090,ko04091,ko04516
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.8173149-CDS-S-firma_F_contig10833:138..5071622815626.8173149-CDS-S-firma_F_contig10833:138..507Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10833 139..507 -
1696949463.269598-CDS-S-firma_F_contig10833:138..5071696949463.269598-CDS-S-firma_F_contig10833:138..507Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10833 139..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10833.1119.1prot_S-firma_F_contig10833.1119.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10833 139..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10833.1119.1

>prot_S-firma_F_contig10833.1119.1 ID=prot_S-firma_F_contig10833.1119.1|Name=mRNA_S-firma_F_contig10833.1119.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=123bp
FYARCPPLTTASVSAADLSGECDDPYSGDVCTATCQSGYSLVAGSESVTC
GVGTWGRAPAVCLRTCPRLPLPAGGEACVEGVVDFDFGTASLPTGWLASP
ETPSIRLEEVWYTLSGRLVAHPP
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mRNA from alignment at S-firma_F_contig10833:139..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10833.1119.1 ID=mRNA_S-firma_F_contig10833.1119.1|Name=mRNA_S-firma_F_contig10833.1119.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=369bp|location=Sequence derived from alignment at S-firma_F_contig10833:139..507- (Sphaerotrichia firma ET2_F female)
TTCTACGCTCGGTGCCCGCCCCTGACCACAGCCTCTGTGTCCGCCGCGGA
CTTGTCCGGGGAGTGCGACGACCCGTACTCAGGGGACGTGTGCACCGCGA
CCTGCCAGTCTGGGTATTCGCTGGTGGCAGGCTCGGAGTCTGTGACGTGT
GGTGTTGGGACTTGGGGCCGCGCCCCCGCCGTGTGCTTGCGCACTTGCCC
CCGGCTTCCCCTCCCCGCCGGCGGCGAAGCATGCGTTGAGGGTGTCGTTG
ACTTTGACTTTGGGACGGCGTCACTTCCGACGGGCTGGTTGGCGTCCCCA
GAGACGCCGTCCATCAGGCTGGAGGAAGTGTGGTACACGCTGTCAGGGCG
GCTGGTGGCCCACCCGCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10833:139..507-

>mRNA_S-firma_F_contig10833.1119.1 ID=mRNA_S-firma_F_contig10833.1119.1|Name=mRNA_S-firma_F_contig10833.1119.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=738bp|location=Sequence derived from alignment at S-firma_F_contig10833:139..507- (Sphaerotrichia firma ET2_F female)
TTCTACGCTCGGTGCCCGCCCCTGACCACAGCCTCTGTGTCCGCCGCGGA
CTTGTCCGGGGAGTGCGACGACCCGTACTCAGGGGACGTGTGCACCGCGA
CCTGCCAGTCTGGGTATTCGCTGGTGGCAGGCTCGGAGTCTGTGACGTGT
GGTGTTGGGACTTGGGGCCGCGCCCCCGCCGTGTGCTTGCGCACTTGCCC
CCGGCTTCCCCTCCCCGCCGGCGGCGAAGCATGCGTTGAGGGTGTCGTTG
ACTTTGACTTTGGGACGGCGTCACTTCCGACGGGCTGGTTGGCGTCCCCA
GAGACGCCGTCCATCAGGCTGGAGGAAGTGTGGTACACGCTGTCAGGGCG
GCTGGTGGCCCACCCGCCGTTCTACGCTCGGTGCCCGCCCCTGACCACAG
CCTCTGTGTCCGCCGCGGACTTGTCCGGGGAGTGCGACGACCCGTACTCA
GGGGACGTGTGCACCGCGACCTGCCAGTCTGGGTATTCGCTGGTGGCAGG
CTCGGAGTCTGTGACGTGTGGTGTTGGGACTTGGGGCCGCGCCCCCGCCG
TGTGCTTGCGCACTTGCCCCCGGCTTCCCCTCCCCGCCGGCGGCGAAGCA
TGCGTTGAGGGTGTCGTTGACTTTGACTTTGGGACGGCGTCACTTCCGAC
GGGCTGGTTGGCGTCCCCAGAGACGCCGTCCATCAGGCTGGAGGAAGTGT
GGTACACGCTGTCAGGGCGGCTGGTGGCCCACCCGCCG
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