prot_S-firma_F_contig1074.1001.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1074.1001.1
Unique Nameprot_S-firma_F_contig1074.1001.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length161
Homology
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BLAST of mRNA_S-firma_F_contig1074.1001.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-5
Identity = 41/123 (33.33%), Postives = 53/123 (43.09%), Query Frame = 0 
Query:   41 WTAHRDEYGRPYWYNSKTKQGTYSSTPYGNVGFLVAVPPQQCWPMSPHPARFHHSAPWSGLVPASPMVVFPXXXXXXXXXXXXXXXSDKKER----WKEVFSEDGEKYWIHTGTKKTTDKDPY 159
            W    D YGR YW +S T +  Y      +   +VAV P     +SPH   F    P     P  P+                    +KKE+    W+  + EDG++YW HT TKKTT KDPY
Sbjct:   54 WDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPM--VSPHGVVFT-PPPVYAAAPNPPLPT---------KKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPY 164
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BLAST of mRNA_S-firma_F_contig1074.1001.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.270e-5
Identity = 43/126 (34.13%), Postives = 59/126 (46.83%), Query Frame = 0 
Query:   41 WTAHRDEYGRPYWYNSKTKQGTYSSTPYGNVGFLVAVPPQQCWPMSPHPARFHHSAPWSGLVPASPM---VVFPXXXXXXXXXXXXXXXSDKKER----WKEVFSEDGEKYWIHTGTKKTTDKDPY 159
            W    D YGR YW +SKT +  +    YG  GF   VPP     ++P P  +    P   +   SP+    +FP                +KKE+    W+  + E+G++YW HT TKKTT KDPY
Sbjct:   38 WEKLTDVYGRTYWQHSKTGEWHFG---YGG-GF---VPPVGT--VNPSPMGY----PGGPVFTPSPVPGGTLFPVAVAGPPGKK-----KEKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPY 145
[Close]
BLAST of mRNA_S-firma_F_contig1074.1001.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.740e-5
Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:   41 WTAHRDEYGRPYWYNSKTKQGTYSSTPYGNVGFLVAVPPQQCWPMSPHPARFHHSAPWSGLVPASPMVVFPXXXXXXXXXXXXXXXSDKKERWKEVFSEDGEKYWIHTGTKKTTDKDPY 159
            W    D YGR YW ++ T +  Y    YG     ++ PP     +SP P    H   ++           P    XXXXXXXXXXX   K  W+  + EDG++YW HT TKKTT KDPY
Sbjct:   54 WDMLTDVYGRAYWQHNVTGEWAYV---YGGG---LSAPPVVA--VSPTPMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXXXXXEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPY 164
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1074.1001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLG2_ECTSI1.370e-533.33WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLF4_ECTSI5.270e-534.13WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI9.740e-539.50WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 128..160
e-value: 1.9
score: 13.9
coord: 36..69
e-value: 1.3
score: 15.4
NoneNo IPR availableGENE3D2.20.70.10coord: 22..67
e-value: 8.3E-6
score: 27.2
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 28..156
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 31..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1074contigS-firma_F_contig1074:14807..16014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1074.1001.1mRNA_S-firma_F_contig1074.1001.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1074 14555..17215 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1074.1001.1 ID=prot_S-firma_F_contig1074.1001.1|Name=mRNA_S-firma_F_contig1074.1001.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=161bp
MGFLSCLGFRGRSTRRPATRRPATRKEQDTTPAQSPPATPWTAHRDEYGR
PYWYNSKTKQGTYSSTPYGNVGFLVAVPPQQCWPMSPHPARFHHSAPWSG
LVPASPMVVFPPPPPPPPPEEKKEEKSDKKERWKEVFSEDGEKYWIHTGT
KKTTDKDPYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR039726Prp40-like
IPR001202WW_dom