mRNA_S-firma_F_contig1074.1001.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1074.1001.1
Unique NamemRNA_S-firma_F_contig1074.1001.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1074.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1074contigS-firma_F_contig1074:14555..17215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002480.1
Exons3
Model size1936
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1074.1001.1prot_S-firma_F_contig1074.1001.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1074 14807..16014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6086185-UTR-S-firma_F_contig1074:14554..148061622815615.6086185-UTR-S-firma_F_contig1074:14554..14806Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 14555..14806 +
1696949455.6546237-UTR-S-firma_F_contig1074:14554..148061696949455.6546237-UTR-S-firma_F_contig1074:14554..14806Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 14555..14806 +
1622815615.649192-UTR-S-firma_F_contig1074:16014..172151622815615.649192-UTR-S-firma_F_contig1074:16014..17215Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 16015..17215 +
1696949455.6901312-UTR-S-firma_F_contig1074:16014..172151696949455.6901312-UTR-S-firma_F_contig1074:16014..17215Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 16015..17215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6192951-CDS-S-firma_F_contig1074:14806..148911622815615.6192951-CDS-S-firma_F_contig1074:14806..14891Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 14807..14891 +
1696949455.662766-CDS-S-firma_F_contig1074:14806..148911696949455.662766-CDS-S-firma_F_contig1074:14806..14891Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 14807..14891 +
1622815615.6287086-CDS-S-firma_F_contig1074:15223..152961622815615.6287086-CDS-S-firma_F_contig1074:15223..15296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 15224..15296 +
1696949455.6708033-CDS-S-firma_F_contig1074:15223..152961696949455.6708033-CDS-S-firma_F_contig1074:15223..15296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 15224..15296 +
1622815615.6380267-CDS-S-firma_F_contig1074:15689..160141622815615.6380267-CDS-S-firma_F_contig1074:15689..16014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 15690..16014 +
1696949455.6804647-CDS-S-firma_F_contig1074:15689..160141696949455.6804647-CDS-S-firma_F_contig1074:15689..16014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 15690..16014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1074.1001.1

>prot_S-firma_F_contig1074.1001.1 ID=prot_S-firma_F_contig1074.1001.1|Name=mRNA_S-firma_F_contig1074.1001.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=161bp
MGFLSCLGFRGRSTRRPATRRPATRKEQDTTPAQSPPATPWTAHRDEYGR
PYWYNSKTKQGTYSSTPYGNVGFLVAVPPQQCWPMSPHPARFHHSAPWSG
LVPASPMVVFPPPPPPPPPEEKKEEKSDKKERWKEVFSEDGEKYWIHTGT
KKTTDKDPYV*
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mRNA from alignment at S-firma_F_contig1074:14555..17215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1074.1001.1 ID=mRNA_S-firma_F_contig1074.1001.1|Name=mRNA_S-firma_F_contig1074.1001.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2661bp|location=Sequence derived from alignment at S-firma_F_contig1074:14555..17215+ (Sphaerotrichia firma ET2_F female)
CCCTTTTCTCGCCCAGTCCCCCCTGTCTACACAACCCTACAGCTCACTAA
AAGCCAACAAGAGCCTAAAAAACTTTAGCCAACTACCACCAGGCAGCAAC
CCTCGAGGCACGTTCAGGCTGATCGCAGCCCCAACGTTTGGCACCCGAAC
GTTTGGCACTCACGCTTTTACCACATACACCCGAAAAGGACCAGAGGCGA
TAGGCGGCGGAAGAGAAACAGCACGAACGCAGCAGGCAGAACACCGGTGC
ACATGGGATTTCTCTCGTGCCTTGGATTCCGTGGACGCAGCACTCGGCGC
CCTGCCACTCGGCGCCCTGCCACTCGAAAAGAGCAAGGTGAGCAAGGGTA
CCTTTGTGGTTGTTGATGAATCGAAAAAGCACGAGCTGTGGTACAGCAGA
GTTGTAGGTGCTTGCTGCGTAAACATGCAATCCATCCATCCATGTGTTCA
ACCCTGGTTGTGGCCTTGTAATCCCTGCTTGCCTCCGTCACCTCAGCTTT
GCTTCACGTTGATGTGTTTTGGCATCCATGTGACGACGGTGGAAGGAGGA
AAGATGCATGCTTTCAACACACCCTCGTATGCTGCACCCGACAAACCGTG
CGCAAACTCTCCAAACTTTCGCCCACTCACGCTGCCTAGATTCTTGTTCT
GTGTCCCACACAACAGCAGACACCACCCCCGCCCAGAGCCCTCCCGCAAC
GCCGTGGACTGCACACCGGGATGAGTACGGTCGTCCGTACTGGTGAGTAC
AAGCTTTACATGTGTTTATTGGTTTGCACAGCAGTCGGTCTTTTGTCTTT
TGCCTAGACTATGTCGTTCGTGTTCTTTTGTGGTGACATCTTCTTTCGTT
CTTTTGAGTCCTTGTGTCCATCGTTCCGCCCGTTGTCCCTCCGTCCCAAA
CAAAAAAAACGACTTCCATTTTTCACCAACGGCCGGTACGCCATACAGCG
CTTTAGCCCGGAAGCAACAATTCCGCTTAGCACTTGAACGAGCCGGCGAG
GTAGCCAGCGACTGATTTGGCGACAGAAGCGTGTCTCCTTCGGTATGACG
ATACTGCTGTACCCCGATACCCCTCCCGATGGAAAAGTAAAAGTTCACCT
CGCCCTCCCTCTCCCTTGTCTCCCCCCCCCCAAAGGTACAACAGCAAGAC
GAAGCAAGGGACATACAGTAGTACCCCGTACGGCAATGTTGGCTTCCTCG
TGGCCGTGCCTCCCCAGCAGTGCTGGCCGATGAGCCCGCACCCCGCCAGA
TTCCACCACTCCGCCCCATGGTCGGGACTGGTTCCGGCGTCGCCGATGGT
GGTGTTCCCCCCGCCGCCACCGCCGCCGCCGCCAGAGGAGAAGAAGGAGG
AGAAGAGCGACAAGAAGGAGCGCTGGAAGGAAGTGTTTTCGGAGGATGGA
GAGAAGTACTGGATCCACACGGGGACGAAAAAGACGACCGACAAGGACCC
GTACGTGTGAAATAACGGGGGTGGGTGGGGTAAAGTCGTTGACAGTCAGT
GGGAGCGGCTTTTGCGCGGCTGCACGTGATTTACGCGGGACATGTTGATG
ACGACTTAGGCACGGTACTTACGGATCGTGTTGATGACGACGCTGCCACT
TGGGGGTGAGGGGGGGTCACAAGGGTTGGAGTAGACGTGAAGCTATCAGG
CGTAGGGCATGCTTGGATGACCACAGAGTAGTAGTAGTAGTATAATGGAG
CCAGAGACCTTTCGCCTTTCAAATCAGCCTGTAACAGCTTTGTTCAGATG
GACGAACTTGTCTGTGCCTTGCTGTGCCATTTTGTTTGAAAACGCCAAGG
AAATCGGGTCCCCCCCTCCCCCTCCTGACCCAAAGAGAGAACGGGAAACT
GCGGCAAGTGTTTGTTGTTTGCAGGCGGCATCGATTTTGTGGATGTGGTG
TTAGGCTCCTTGAGTGGTGCAGAGTCTCACGCTGTGAACAGTTGCAGTCG
TACGGAGTTACACGTAGGAACATTCGTGTCGCGGACGCGTGTCGGGGGGA
GTCCGACATGTTCGGTGGAGCGGAGACAGCAGGTAGGTTCATGCCCGTGA
TGTTTACTTTTAGTGGCGTCGCTCGGGTCATCGTAAAGACAGGGTGTTGT
TAATTTGTTCGGTTTAGCTTGGGGAAAAGCGACTTGGCTCTTGCCGTGCC
ATGCGCTTTTTGTTTTGCGTGTGTAGATATGCGGTAGCAGGTGCTGTTTT
TCCTATCAAGAGGGCCATCACAAAGAGGTCGGCGTTGGACAACATCAACA
TAAATCATTCATCTAATGAAGCGACGTGTGTTTGTGTCGGTTGTGCGTTT
TGTGTTGCAGTTTTCTAGGTGTAGGTGCAGTTTGATGTCATGTCTATGGA
GCAATACCAATCCAAAATGGCAATCGTGACCGTCCGGTTAGCCGTTTGTT
GATATATGTAGTGTAGCTGACATAGTGAAGTGTCGTGGTACCTTCTGTAT
GATACATGGTTTTGCGTTTTTGGGAACGGAATGCGATCTGGTTGTGGTGT
ACAGGGGCAGTTTGTGATAACCTGGTACACACGAAGAGGGTTGATATGCT
GTTGTGAGTTCGTGTTCTTCGTGTTCGCTCCGCCGGGAGGATACATCTTG
ATATCGCTTCTTGGGTGGACGGGAAATAACAACGGCCGTGGTACATTCCA
ATTGAATCGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1074:14555..17215+

>mRNA_S-firma_F_contig1074.1001.1 ID=mRNA_S-firma_F_contig1074.1001.1|Name=mRNA_S-firma_F_contig1074.1001.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=966bp|location=Sequence derived from alignment at S-firma_F_contig1074:14555..17215+ (Sphaerotrichia firma ET2_F female)
ATGGGATTTCTCTCGTGCCTTGGATTCCGTGGACGCAGCACTCGGCGCCC
TGCCACTCGGCGCCCTGCCACTCGAAAAGAGCAAGATGGGATTTCTCTCG
TGCCTTGGATTCCGTGGACGCAGCACTCGGCGCCCTGCCACTCGGCGCCC
TGCCACTCGAAAAGAGCAAGACACCACCCCCGCCCAGAGCCCTCCCGCAA
CGCCGTGGACTGCACACCGGGATGAGTACGGTCGTCCGTACTGACACCAC
CCCCGCCCAGAGCCCTCCCGCAACGCCGTGGACTGCACACCGGGATGAGT
ACGGTCGTCCGTACTGGTACAACAGCAAGACGAAGCAAGGGACATACAGT
AGTACCCCGTACGGCAATGTTGGCTTCCTCGTGGCCGTGCCTCCCCAGCA
GTGCTGGCCGATGAGCCCGCACCCCGCCAGATTCCACCACTCCGCCCCAT
GGTCGGGACTGGTTCCGGCGTCGCCGATGGTGGTGTTCCCCCCGCCGCCA
CCGCCGCCGCCGCCAGAGGAGAAGAAGGAGGAGAAGAGCGACAAGAAGGA
GCGCTGGAAGGAAGTGTTTTCGGAGGATGGAGAGAAGTACTGGATCCACA
CGGGGACGAAAAAGACGACCGACAAGGACCCGTACGTGTGAGTACAACAG
CAAGACGAAGCAAGGGACATACAGTAGTACCCCGTACGGCAATGTTGGCT
TCCTCGTGGCCGTGCCTCCCCAGCAGTGCTGGCCGATGAGCCCGCACCCC
GCCAGATTCCACCACTCCGCCCCATGGTCGGGACTGGTTCCGGCGTCGCC
GATGGTGGTGTTCCCCCCGCCGCCACCGCCGCCGCCGCCAGAGGAGAAGA
AGGAGGAGAAGAGCGACAAGAAGGAGCGCTGGAAGGAAGTGTTTTCGGAG
GATGGAGAGAAGTACTGGATCCACACGGGGACGAAAAAGACGACCGACAA
GGACCCGTACGTGTGA
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