prot_S-firma_F_contig1069.932.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1069.932.1
Unique Nameprot_S-firma_F_contig1069.932.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length199
Homology
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BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 6.340e-115
Identity = 161/198 (81.31%), Postives = 180/198 (90.91%), Query Frame = 0 
Query:    1 MGAPKLLGGVALIVSTVFYLLPMSMHLAFGADIPDYIYLGMGMLIGLPILGFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDLDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQSQ 198
            MGAPKLLGGVAL+ STVFY+LPMSMH+AFGADIP   Y GM +LIGLPILGF+AFEMWKT+ +NRR+R+ R+KLE I+ QSFGCI+PQVL+SFVVF VR++KRGC GSSWVE+GE AV  NLCAA K++GAVDTEGPLRRLCEATFG +LDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQ Q
Sbjct:    1 MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ 198
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BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: A0A7S2V258_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.570e-18
Identity = 49/147 (33.33%), Postives = 84/147 (57.14%), Query Frame = 0 
Query:   46 GLPILGFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDLDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMR 192
            G  ++   A  ++K + + R  R  +  +E + EQ++ CI  QVL+S VVF V++ +R    S +  +GE+ V       V+++ + D    L+ LC    G D  V V+ G G +GPTGLAVG+ R+ +GP LA+ V  +I+++++
Sbjct:   71 GAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFVQ------VELSQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVREGYGPSLANHVGMAIEQSIQ 211
[Close]
BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Match: A0A7S4EDG4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDG4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.870e-7
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 0 
Query:   62 SENRRIRRARKKLEE----IQEQSFGCIQPQVLNSFVVFSVRINKRGCVGSSWVEMGEDAVVANLCAAVK-VTGAVDTEGPLRRLCEATFGPDL-----DVIVYCGGGTAGPTGLAVGVGRQNFGPYLA 180
            + +RR  RAR +  +    I+ Q+F C+ PQ    FVVF VR+ +RG   S  V +  D +   L    +   G +DTE  LR L EA   P       +V+ + G    GPTGLA G+  +   P  A
Sbjct:  133 ARDRRRDRARTRGAQSQRAIKSQTFQCVAPQTPGEFVVFPVRVARRGVAASRVVSLDGDELRVELDTKQRDAAGRLDTEASLRSLLEAALLPRFPTGAAEVVTFYG---EGPTGLAGGLALRRGAPDFA 258
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1069.932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTL5_ECTSI6.340e-11581.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V258_9STRA1.570e-1833.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EDG4_9STRA9.870e-734.11Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..58
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..30
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1069contigS-firma_F_contig1069:16584..19697 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1069.932.1mRNA_S-firma_F_contig1069.932.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1069 15899..19898 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1069.932.1 ID=prot_S-firma_F_contig1069.932.1|Name=mRNA_S-firma_F_contig1069.932.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=199bp
MGAPKLLGGVALIVSTVFYLLPMSMHLAFGADIPDYIYLGMGMLIGLPIL
GFVAFEMWKTISENRRIRRARKKLEEIQEQSFGCIQPQVLNSFVVFSVRI
NKRGCVGSSWVEMGEDAVVANLCAAVKVTGAVDTEGPLRRLCEATFGPDL
DVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQSQ*
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