prot_S-firma_F_contig10478.670.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10478.670.1
Unique Nameprot_S-firma_F_contig10478.670.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length461
Homology
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BLAST of mRNA_S-firma_F_contig10478.670.1 vs. uniprot
Match: D8LGP3_ECTSI (Flagellar protofilament ribbon protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP3_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.180e-93
Identity = 168/251 (66.93%), Postives = 192/251 (76.49%), Query Frame = 0 
Query:    1 MRGLQGDLADFRRCVRSSQSQPRPPTKPKSSFYEGPPQRPGTLRERFFKASENSGKTLRFLARATQDTKMTSTRDNVFIIRFYPEDDSLSVYTTHTLGSNSGGLYKGVYLARTVDMMNKDTGESFKARDFYVGSVAKLPSVSLEIIDVDDFSRHYLAQETPPSDRQWQTAHIWARLLSLATSGGTSARAGQDVVAPTAIADGDKAIDGFPCSPGKSVTFHGGDGRFGGTAAY-LGP-DSRAFE-GLSRDNN 248
            MRGLQGDL DF+RC+   QSQPRPP KPKSSFYEGPPQR GTLRERFFKASENSGKTLRFLA+ATQDTK TSTRDNVFIIRFYPEDD+LSVYT+H LG N+GGLY+GVYLAR  DM+N+ TGE FKARDF++GSVAKLPSVSLE++DVDDFSR YLA+ETP SD  WQTA +W+ LL+LAT+GG       +     A A   K +   P SP +S  F G DG   G A   L P D+ A E G S +N+
Sbjct:  457 MRGLQGDLEDFQRCIHPGQSQPRPPNKPKSSFYEGPPQRTGTLRERFFKASENSGKTLRFLAKATQDTKTTSTRDNVFIIRFYPEDDALSVYTSHNLGKNAGGLYRGVYLARCHDMVNEATGEPFKARDFHIGSVAKLPSVSLEVVDVDDFSRRYLARETPSSDSHWQTAPMWSSLLALATAGGAEVTESAEA---RATAGAHKHVGFHPFSPDESTAFGGTDGDGAGAAEESLQPSDNGALEEGFSHENH 704
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BLAST of mRNA_S-firma_F_contig10478.670.1 vs. uniprot
Match: A0A6H5J7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7M8_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 9.190e-93
Identity = 163/252 (64.68%), Postives = 192/252 (76.19%), Query Frame = 0 
Query:    1 MRGLQGDLADFRRCVRSSQSQPRPPTKPKSSFYEGPPQRPGTLRERFFKASENSGKTLRFLARATQDTKMTSTRDNVFIIRFYPEDDSLSVYTTHTLGSNSGGLYKGVYLARTVDMMNKDTGESFKARDFYVGSVAKLPSVSLEIIDVDDFSRHYLAQETPPSDRQWQTAHIWARLLSLATSGGTSARAGQDVVAPTAIADGDKAIDGFPCSPGKSVTFHGGDGRFGGTAAY-LGP-DSRAFEGLSRDNNSA 250
            MRGLQG L DF+RC++  QSQPRPP KPKSSFYEGPPQR GTLRERFFKAS+NSGKTLRF+A+ATQDTK TSTRD+VFIIRFYPEDD+LSVYT+H LG N+GGLY+GVYLAR  DM+N+ TGE FKARDF++GSVAKLPS+SLEI+DVDDFSRHYLA+ET  SDR WQTA +W+RLL+LAT  G       +     A     K +   P SP KS  F G +G   G A   L P D+   +G S +N++A
Sbjct:  303 MRGLQGGLEDFKRCIQPGQSQPRPPNKPKSSFYEGPPQRTGTLRERFFKASDNSGKTLRFMAKATQDTKTTSTRDSVFIIRFYPEDDALSVYTSHNLGKNAGGLYRGVYLARCHDMVNEATGEPFKARDFHIGSVAKLPSISLEIVDVDDFSRHYLARETSSSDRHWQTAPMWSRLLALATPSGAEVTESAEA---RATPGAHKHVGFHPFSPDKSTPFEGTNGEGAGAAEESLQPSDNGGLQGFSHENHAA 551
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10478.670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP3_ECTSI1.180e-9366.93Flagellar protofilament ribbon protein n=1 Tax=Ect... [more]
A0A6H5J7M8_9PHAE9.190e-9364.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006602Uncharacterised domain DM10SMARTSM00676dm10coord: 54..160
e-value: 3.4E-5
score: 29.5
IPR006602Uncharacterised domain DM10PROSITEPS51336DM10coord: 54..160
score: 20.571
IPR010554Domain of unknown function DUF1126PFAMPF06565DUF1126coord: 51..151
e-value: 5.7E-13
score: 48.6
NoneNo IPR availableGENE3D2.30.29.170coord: 49..168
e-value: 4.8E-14
score: 53.9
NoneNo IPR availablePANTHERPTHR12086:SF11EF-HAND DOMAIN-CONTAINING FAMILY MEMBER C2coord: 44..159
IPR040193EF-hand domain-containing protein EFHC1/EFHC2/EFHBPANTHERPTHR12086EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEINcoord: 44..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10478contigS-firma_F_contig10478:420..4673 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10478.670.1mRNA_S-firma_F_contig10478.670.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10478 92..5211 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10478.670.1 ID=prot_S-firma_F_contig10478.670.1|Name=mRNA_S-firma_F_contig10478.670.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=461bp
MRGLQGDLADFRRCVRSSQSQPRPPTKPKSSFYEGPPQRPGTLRERFFKA
SENSGKTLRFLARATQDTKMTSTRDNVFIIRFYPEDDSLSVYTTHTLGSN
SGGLYKGVYLARTVDMMNKDTGESFKARDFYVGSVAKLPSVSLEIIDVDD
FSRHYLAQETPPSDRQWQTAHIWARLLSLATSGGTSARAGQDVVAPTAIA
DGDKAIDGFPCSPGKSVTFHGGDGRFGGTAAYLGPDSRAFEGLSRDNNSA
FDTLSAATSGGKSGGTGGGRGCRSVLPPPRRRRSARGNPGRRQPPNGLLT
AGTASRRLRLPRLRLPLLPRRAAAVVGFRTLAAGGCRWEGSNSRLLWWRD
RHPPSEVVRRERGVGARRQGRAMQAWGGEREQRPAGRRNRQRGSWTCEEW
PWTLMRRQQAGETTCLCSARWHACFPMCSVTVARRRCLGRSRRRERAREM
PRTFGPCAGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040193EFHC1/EFHC2/EFHB
IPR010554DUF1126
IPR006602Uncharacterised_DM10