prot_S-firma_F_contig10477.669.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10477.669.1
Unique Nameprot_S-firma_F_contig10477.669.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length58
Homology
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BLAST of mRNA_S-firma_F_contig10477.669.1 vs. uniprot
Match: A0A6P4C1S4_ARADU (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B n=2 Tax=Arachis TaxID=3817 RepID=A0A6P4C1S4_ARADU)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-7
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0 
Query:    3 FKSQDAWRSHPVFTNLWRSAFPGFKYAAVAFGVYCFGEFAYDKMTAP 49
            F+ +D WR HP+ TN +R A PGF  A VAFG+Y  GE  + +  AP
Sbjct:   45 FRRRDEWRKHPMLTNQFRHALPGFGIAVVAFGIYLVGEQIFSRAGAP 91
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10477.669.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P4C1S4_ARADU1.030e-748.94NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012576NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3PFAMPF08122NDUF_B12coord: 7..43
e-value: 5.9E-8
score: 32.6
IPR012576NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3PANTHERPTHR15082NADH-UBIQUINONE OXIDOREDUCTASE B12 SUBUNITcoord: 3..54
NoneNo IPR availablePANTHERPTHR15082:SF2NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 3coord: 3..54
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10477contigS-firma_F_contig10477:3756..3929 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10477.669.1mRNA_S-firma_F_contig10477.669.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10477 3756..3935 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10477.669.1 ID=prot_S-firma_F_contig10477.669.1|Name=mRNA_S-firma_F_contig10477.669.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=58bp
MVFKSQDAWRSHPVFTNLWRSAFPGFKYAAVAFGVYCFGEFAYDKMTAPK
PAHEDATK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012576NDUFB3