mRNA_S-firma_F_contig10477.669.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10477.669.1
Unique NamemRNA_S-firma_F_contig10477.669.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10477.669.1 vs. uniprot
Match: A0A6P4C1S4_ARADU (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B n=2 Tax=Arachis TaxID=3817 RepID=A0A6P4C1S4_ARADU)

HSP 1 Score: 54.7 bits (130), Expect = 3.950e-8
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 TGMVFKSQDAWRSHPVFTNLWRSAFPGFKYAAVAFGVYCFGEFAYDKMTAP 153
            T   F+ +D WR HP+ TN +R A PGF  A VAFG+Y  GE  + +  AP
Sbjct:   41 TAEFFRRRDEWRKHPMLTNQFRHALPGFGIAVVAFGIYLVGEQIFSRAGAP 91
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10477.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P4C1S4_ARADU3.950e-847.06NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10477contigS-firma_F_contig10477:3756..3935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4096.XP_009804929.1
PFAMsNDUF_B12
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue2.46e-14
EggNOG OGs2DZXM@1|root,2S7DZ@2759|Eukaryota,37WW4@33090|Viridiplantae,3GM1M@35493|Streptophyta,44M8X@71274|asterids
DescriptionNADH-ubiquinone oxidoreductase B12 subunit family
COG categoryS
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.1904745-CDS-S-firma_F_contig10477:3755..39291622815582.1904745-CDS-S-firma_F_contig10477:3755..3929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10477 3756..3929 -
1696949432.7479951-CDS-S-firma_F_contig10477:3755..39291696949432.7479951-CDS-S-firma_F_contig10477:3755..3929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10477 3756..3929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.205153-UTR-S-firma_F_contig10477:3929..39351622815582.205153-UTR-S-firma_F_contig10477:3929..3935Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10477 3930..3935 -
1696949432.760633-UTR-S-firma_F_contig10477:3929..39351696949432.760633-UTR-S-firma_F_contig10477:3929..3935Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10477 3930..3935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10477.669.1prot_S-firma_F_contig10477.669.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10477 3756..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10477.669.1

>prot_S-firma_F_contig10477.669.1 ID=prot_S-firma_F_contig10477.669.1|Name=mRNA_S-firma_F_contig10477.669.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=58bp
MVFKSQDAWRSHPVFTNLWRSAFPGFKYAAVAFGVYCFGEFAYDKMTAPK
PAHEDATK
back to top

mRNA from alignment at S-firma_F_contig10477:3756..3935-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10477.669.1 ID=mRNA_S-firma_F_contig10477.669.1|Name=mRNA_S-firma_F_contig10477.669.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=180bp|location=Sequence derived from alignment at S-firma_F_contig10477:3756..3935- (Sphaerotrichia firma ET2_F female)
ACTGGCATGGTGTTCAAGTCTCAGGACGCGTGGCGCAGCCACCCCGTGTT
CACAAACCTGTGGAGGTCTGCTTTCCCTGGCTTCAAGTATGCCGCCGTGG
CGTTCGGCGTGTACTGCTTTGGGGAGTTTGCGTACGACAAGATGACGGCA
CCAAAACCCGCGCACGAGGACGCAACAAAA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10477:3756..3935-

>mRNA_S-firma_F_contig10477.669.1 ID=mRNA_S-firma_F_contig10477.669.1|Name=mRNA_S-firma_F_contig10477.669.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=348bp|location=Sequence derived from alignment at S-firma_F_contig10477:3756..3935- (Sphaerotrichia firma ET2_F female)
ATGGTGTTCAAGTCTCAGGACGCGTGGCGCAGCCACCCCGTGTTCACAAA
CCTGTGGAGGTCTGCTTTCCCTGGCTTCAAGTATGCCGCCGTGGCGTTCG
GCGTGTACTGCTTTGGGGAGTTTGCGTACGACAAGATGACGGCACCAAAA
CCCGCGCACGAGGACGCAACAAAAATGGTGTTCAAGTCTCAGGACGCGTG
GCGCAGCCACCCCGTGTTCACAAACCTGTGGAGGTCTGCTTTCCCTGGCT
TCAAGTATGCCGCCGTGGCGTTCGGCGTGTACTGCTTTGGGGAGTTTGCG
TACGACAAGATGACGGCACCAAAACCCGCGCACGAGGACGCAACAAAA
back to top