prot_S-firma_F_contig10469.659.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10469.659.1
Unique Nameprot_S-firma_F_contig10469.659.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length168
Homology
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BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.560e-46
Identity = 94/154 (61.04%), Postives = 110/154 (71.43%), Query Frame = 0 
Query:    2 DGGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGVRALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSI-PGQEDVGLASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVAVLVD 154
            DGG EDAIKRYKLAL+ QPRALV WRELAACY+LS QH ++  AL+CG +A  P    D +     K RS S  A  APLYLQ+ A +L + PG+ED GLA++GDAFR GKGG  GH LRG+L S LGKD  AA + AKAR+AGLDP VA L D
Sbjct: 1544 DGGREDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQAAGPADSVDSS--SSGKRRSVS--ATAAPLYLQMAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLNSGLGKDSLAAGSFAKARDAGLDPAVAALAD 1693
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BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 8.310e-46
Identity = 94/153 (61.44%), Postives = 108/153 (70.59%), Query Frame = 0 
Query:    3 GGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGVRALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSI-PGQEDVGLASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVAVLVD 154
            GG EDAIKRYKLAL+ +PRALV WRELA CY LS QH ++  AL+CG +A  P    D A     K RS S  A  APLYLQL A +L + PG+ED GLA++GDAFR GKGG  GH LRG+LYS LGKD  AA + +KAREAGLDP VA L D
Sbjct: 1153 GGHEDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQAAGPAGSGDCA--SSGKRRSVS--ATAAPLYLQLAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLYSGLGKDSLAAGSFSKAREAGLDPAVAALAD 1301
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI4.560e-4661.04Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE8.310e-4661.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..154
e-value: 2.6E-6
score: 29.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 3..143
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..22
score: 9.16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10469contigS-firma_F_contig10469:80..1226 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10469.659.1mRNA_S-firma_F_contig10469.659.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10469 80..1904 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10469.659.1 ID=prot_S-firma_F_contig10469.659.1|Name=mRNA_S-firma_F_contig10469.659.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=168bp
SDGGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGV
RALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSIPGQEDVGL
ASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVA
VLVDGLVAAQVASMDAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom_sf