mRNA_S-firma_F_contig10469.659.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10469.659.1
Unique NamemRNA_S-firma_F_contig10469.659.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 6.420e-43
Identity = 94/154 (61.04%), Postives = 110/154 (71.43%), Query Frame = 1 
Query:    4 DGGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGVRALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSI-PGQEDVGLASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVAVLVD 462
            DGG EDAIKRYKLAL+ QPRALV WRELAACY+LS QH ++  AL+CG +A  P    D +     K RS S  A  APLYLQ+ A +L + PG+ED GLA++GDAFR GKGG  GH LRG+L S LGKD  AA + AKAR+AGLDP VA L D
Sbjct: 1544 DGGREDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQAAGPADSVDSS--SSGKRRSVS--ATAAPLYLQMAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLNSGLGKDSLAAGSFAKARDAGLDPAVAALAD 1693
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.100e-42
Identity = 94/153 (61.44%), Postives = 108/153 (70.59%), Query Frame = 1 
Query:    7 GGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGVRALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSI-PGQEDVGLASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVAVLVD 462
            GG EDAIKRYKLAL+ +PRALV WRELA CY LS QH ++  AL+CG +A  P    D A     K RS S  A  APLYLQL A +L + PG+ED GLA++GDAFR GKGG  GH LRG+LYS LGKD  AA + +KAREAGLDP VA L D
Sbjct: 1153 GGHEDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQAAGPAGSGDCA--SSGKRRSVS--ATAAPLYLQLAAGTLMMSPGEEDAGLAAVGDAFRLGKGGAVGHVLRGLLYSGLGKDSLAAGSFSKAREAGLDPAVAALAD 1301
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5J8F0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8F0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.770e-7
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE
Sbjct:   56 RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLE 90
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5KM33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM33_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-6
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA  +  LE
Sbjct:  139 RQPTVAELAAHDGESTTPRKAQHKLGKAVNTIQLE 173
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.590e-6
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = -2 
Query: 1071 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLEHL 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE L
Sbjct:  533 RQPTVAELAAHDGESTTPRKAQHKLGKAINDIQLEKL 569
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5K4V8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.860e-6
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = -2 
Query: 1074 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLEH 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE+
Sbjct:  261 RQPTVAELAAHDGESTTPRKAQHKLGKAVNKIQLEN 296
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.740e-6
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE
Sbjct:  102 RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLE 136
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.220e-6
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE
Sbjct:  139 RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLE 173
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.380e-6
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE
Sbjct:  369 RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLE 403
[Close]
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.440e-6
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query: 1077 RQPTVAELAAHDGESITPRKAQHKLGKASTSYSLE 1181
            RQPTVAELAAHDGES TPRKAQHKLGKA     LE
Sbjct:  518 RQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLE 552
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10469.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G059_ECTSI6.420e-4361.04Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE1.100e-4261.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8F0_9PHAE2.770e-782.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KM33_9PHAE1.050e-682.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLG6_9PHAE3.590e-681.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4V8_9PHAE3.860e-680.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JS53_9PHAE5.740e-682.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE6.220e-682.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M1_9PHAE6.380e-682.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL14_9PHAE7.440e-682.86Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10469contigS-firma_F_contig10469:80..1904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G059
Preferred nameTTC37
PFAMsTPR_16,TPR_19,TPR_2,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
Evalue7.48e-47
EggNOG OGsKOG1127@1|root,KOG1127@2759|Eukaryota
Descriptionexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size1183
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10469.659.1prot_S-firma_F_contig10469.659.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10469 80..1226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.2022443-CDS-S-firma_F_contig10469:79..1111622815581.2022443-CDS-S-firma_F_contig10469:79..111Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10469 80..111 +
1696949432.125455-CDS-S-firma_F_contig10469:79..1111696949432.125455-CDS-S-firma_F_contig10469:79..111Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10469 80..111 +
1622815581.218747-CDS-S-firma_F_contig10469:754..12261622815581.218747-CDS-S-firma_F_contig10469:754..1226Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10469 755..1226 +
1696949432.1377084-CDS-S-firma_F_contig10469:754..12261696949432.1377084-CDS-S-firma_F_contig10469:754..1226Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10469 755..1226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.2326312-UTR-S-firma_F_contig10469:1226..19041622815581.2326312-UTR-S-firma_F_contig10469:1226..1904Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10469 1227..1904 +
1696949432.1500745-UTR-S-firma_F_contig10469:1226..19041696949432.1500745-UTR-S-firma_F_contig10469:1226..1904Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10469 1227..1904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10469.659.1

>prot_S-firma_F_contig10469.659.1 ID=prot_S-firma_F_contig10469.659.1|Name=mRNA_S-firma_F_contig10469.659.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=168bp
SDGGFEDAIKRYKLALQLQPRALVAWRELAACYDLSGQHQSSLTALKCGV
RALCPVVGEDDAGADDAKHRSGSGAAKVAPLYLQLGASSLSIPGQEDVGL
ASIGDAFRFGKGGVAGHALRGILYSRLGKDGPAASALAKAREAGLDPVVA
VLVDGLVAAQVASMDAD*
back to top

mRNA from alignment at S-firma_F_contig10469:80..1904+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10469.659.1 ID=mRNA_S-firma_F_contig10469.659.1|Name=mRNA_S-firma_F_contig10469.659.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1825bp|location=Sequence derived from alignment at S-firma_F_contig10469:80..1904+ (Sphaerotrichia firma ET2_F female)
AGCGACGGCGGGTTCGAAGATGCGATCAAGAGGTGTGAAAAATGAAAACG
GGGCGTTTCGACATTGCAGCAACACGACCGAACGACGCGCACTAGCAATA
CGTCTTTCCACATGTTGGTGTTCCTCTGCCCAGAGCTGATCCGATGAGGC
GACTAGGGAAACGTTTCCGCTCTGATTTGAAGAATAATGCATGAGCAAGA
CCGGGCCAGCAGTTTTTTTCTACTGCTGGTTCACTCCCGACCCGACGCGC
TTCGCGCTCGATCTTTATTCGCCTTTTTGGAGGTGTCCAGCGTTACTGGC
ACTTTTCCGACGTTCGGCCTCGACGTTGGTTGGATCTTCGCCCCCCGGGA
TGCTGTATTGATGACAGACACAGCCGATTTCCTCGGGCGCCAGAAAGGCC
ACTACTTCGAAATTTGCGTGCGTGAATGGGGGGCCGTCTACTACAACACA
ATTCGAGTTCTTCCCTTCCGTTCTCTTAAATGTTCCTCTTGTCAACTTCC
TCTCTCATCTCTGGCAACCCAGACCGGTCACGCTCGTCGCGGCCTCGGAG
AGAGCAAGAAGTCCTCGTTTCACTGGGCCAGTAGGCAGGCATTCCCTTCG
TTCCGTTCCAGTAATAGTTATTTCCAGATACTGCACCCTCAAAACCCCCG
TTCCTCCTCTGAACACCAAGTACAGGTACAAGCTCGCGCTCCAGCTACAG
CCCCGAGCTCTGGTGGCCTGGCGGGAGCTCGCAGCTTGCTACGACCTCTC
GGGGCAGCATCAGTCGTCGCTGACGGCGTTGAAGTGTGGGGTACGGGCGC
TCTGCCCTGTGGTTGGTGAGGACGATGCTGGAGCTGACGACGCCAAGCAC
CGCAGTGGGAGTGGCGCCGCAAAGGTGGCACCCTTGTACCTGCAGCTGGG
GGCGAGCAGTCTGTCGATTCCGGGGCAAGAAGATGTCGGCTTGGCCTCAA
TCGGGGATGCTTTCCGGTTCGGGAAGGGAGGGGTGGCGGGGCATGCCCTG
CGCGGGATTCTGTACTCGAGGCTGGGTAAGGATGGCCCAGCGGCCAGCGC
GCTTGCGAAGGCGAGGGAGGCCGGTCTAGACCCCGTGGTCGCCGTCCTGG
TGGATGGGCTCGTTGCCGCCCAGGTTGCGTCGATGGACGCTGACTAGAGT
CGGGCCCGACGTTCTTTGAACCCGAAGGCGAAGAAATAGTCTATGCCTCG
TGTTGGGGCTTGTTCAGGGGTTGGGCTTACCGTGGAGTCTGGAAGCCTGA
CTGCTGTGTTCGGTGTGGCTTCGTGTTGAAAGGGTTGGTACATCTCGTGC
TACCTTTGCGGCCTGCACGTGGGCGACTTGCGCTGCCGAAGACCGCGGCT
GTCGTCGAGGCCGCAAGAGCGGCAGCAATGGCATACTTGTAGTGGCCGAA
TGCGATACTTCGTATATATGTTCAAATCTCGTCGGGAACTGCAAGTACGG
GACGCCCTAAAGAAGGTCGGACGCTTGTTTGTTTCTCTTAGAAAGCGAAA
TTCGAGCGCGAGCTTTCTTGTACTTCTTCAACTAAGGCTGCCTTCGTTGC
CCTCTCCGGACAATGGCATAGGGGTTATTTAGACGGGCGACTCTTCGTGC
GTGAATGCGGCAAACCCGTAGGAGCTCGGGACATTACTTAGCCTCGCTAC
CTCCGTAAGGGTCGTCTATCGTGGGTGGGATCGCTCCTTCAGGGAGTTGC
TCCAGAGACTCCACAAATGTTCCAAGCTGTAGCTTGTTGATGCCTTGCCC
AGTTTGTGCTGGGCCTTCCTCGGCGTAATGGATTCCCCATCGTGTGCTGC
CAGCTCTGCCACCGTAGGCTGGCGT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10469:80..1904+

>mRNA_S-firma_F_contig10469.659.1 ID=mRNA_S-firma_F_contig10469.659.1|Name=mRNA_S-firma_F_contig10469.659.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1008bp|location=Sequence derived from alignment at S-firma_F_contig10469:80..1904+ (Sphaerotrichia firma ET2_F female)
AGCGACGGCGGGTTCGAAGATGCGATCAAGAGAGCGACGGCGGGTTCGAA
GATGCGATCAAGAGGTACAAGCTCGCGCTCCAGCTACAGCCCCGAGCTCT
GGTGGCCTGGCGGGAGCTCGCAGCTTGCTACGACCTCTCGGGGCAGCATC
AGTCGTCGCTGACGGCGTTGAAGTGTGGGGTACGGGCGCTCTGCCCTGTG
GTTGGTGAGGACGATGCTGGAGCTGACGACGCCAAGCACCGCAGTGGGAG
TGGCGCCGCAAAGGTGGCACCCTTGTACCTGCAGCTGGGGGCGAGCAGTC
TGTCGATTCCGGGGCAAGAAGATGTCGGCTTGGCCTCAATCGGGGATGCT
TTCCGGTTCGGGAAGGGAGGGGTGGCGGGGCATGCCCTGCGCGGGATTCT
GTACTCGAGGCTGGGTAAGGATGGCCCAGCGGCCAGCGCGCTTGCGAAGG
CGAGGGAGGCCGGTCTAGACCCCGTGGTCGCCGTCCTGGTGGATGGGCTC
GTTGCCGCCCAGGTTGCGTCGATGGACGCTGACTAGGTACAAGCTCGCGC
TCCAGCTACAGCCCCGAGCTCTGGTGGCCTGGCGGGAGCTCGCAGCTTGC
TACGACCTCTCGGGGCAGCATCAGTCGTCGCTGACGGCGTTGAAGTGTGG
GGTACGGGCGCTCTGCCCTGTGGTTGGTGAGGACGATGCTGGAGCTGACG
ACGCCAAGCACCGCAGTGGGAGTGGCGCCGCAAAGGTGGCACCCTTGTAC
CTGCAGCTGGGGGCGAGCAGTCTGTCGATTCCGGGGCAAGAAGATGTCGG
CTTGGCCTCAATCGGGGATGCTTTCCGGTTCGGGAAGGGAGGGGTGGCGG
GGCATGCCCTGCGCGGGATTCTGTACTCGAGGCTGGGTAAGGATGGCCCA
GCGGCCAGCGCGCTTGCGAAGGCGAGGGAGGCCGGTCTAGACCCCGTGGT
CGCCGTCCTGGTGGATGGGCTCGTTGCCGCCCAGGTTGCGTCGATGGACG
CTGACTAG
back to top