prot_S-firma_F_contig10461.654.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10461.654.1
Unique Nameprot_S-firma_F_contig10461.654.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length167
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10461.654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 28..54
e-value: 3.4E-5
score: 21.7
coord: 63..97
e-value: 1.2E-9
score: 35.7
coord: 98..131
e-value: 1.8E-4
score: 19.4
coord: 134..166
e-value: 1.2E-5
score: 23.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 119..166
e-value: 2.4E-4
score: 21.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 28..53
e-value: 5.1E-4
score: 20.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 61..108
e-value: 2.4E-9
score: 37.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 25..59
score: 9.569
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 131..165
score: 10.271
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 96..130
score: 11.279
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..24
score: 6.116
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 61..95
score: 12.419
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..167
e-value: 4.9E-49
score: 169.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 6..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10461contigS-firma_F_contig10461:117..4536 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10461.654.1mRNA_S-firma_F_contig10461.654.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10461 117..4536 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10461.654.1 ID=prot_S-firma_F_contig10461.654.1|Name=mRNA_S-firma_F_contig10461.654.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
CGRGLQWKKALSSLVEMREAGVKANSFVYSAAIDACAKGRQWQKALVLLR
EMEAVDGLPGNLICYNAAVDACGKAGRPGEALALLSKMRKAGIKPNAVSY
LSAISACSRVGDWQQALWLLDEMTVFGVQPDLKCFCSAITACGKGGKWKQ
ALEVLDAMHRDGPPPND
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat