prot_S-firma_F_contig104.580.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig104.580.1
Unique Nameprot_S-firma_F_contig104.580.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length167
Homology
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BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Match: A0A6H5KCJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-8
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    2 GRKLWRQSEGLSPRTGQLCLSPRRRILGGEVNGAGI--GSSSGGEQV------DVVDWDEVRPSLTA 60
            GRKLWRQSEGLSPRTGQLCLSPRRR  GG         G  SGG+ +        +DW E+R +  A
Sbjct:  778 GRKLWRQSEGLSPRTGQLCLSPRRRGGGGXXXXXXXCGGVGSGGDWIVPFFGGGALDWGEMRTTAVA 844
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BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Match: D8LHM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.000e-5
Identity = 35/75 (46.67%), Postives = 38/75 (50.67%), Query Frame = 0 
Query:    2 GRKLWRQSEGLSPRTGQLCLSPRRR-----------ILGGEVNGAGIGSS-----SGGEQVDVVDWDEVRPSLTA 60
            GRKLWRQSEGL PRTGQLCLSPRRR                  G G G       SGG     +DW E+R +  A
Sbjct:  775 GRKLWRQSEGLCPRTGQLCLSPRRRGXXXXXXXXXXXXXXXCGGVGSGGDWIVPFSGGG---ALDWGEMRTTAVA 846
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCJ2_9PHAE1.620e-853.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHM5_ECTSI1.000e-546.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:50651..51151 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.580.1mRNA_S-firma_F_contig104.580.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig104 50651..51153 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig104.580.1 ID=prot_S-firma_F_contig104.580.1|Name=mRNA_S-firma_F_contig104.580.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
VGRKLWRQSEGLSPRTGQLCLSPRRRILGGEVNGAGIGSSSGGEQVDVVD
WDEVRPSLTAHQQDSQLGLLDTAVGEDRNDRSEGSSDESFADMPPTSGRS
AEEKLRIENNADLNRKNGGERGGGLHGEEGTRVGAAAAAATATAEAQGDD
VAMPTTHRGHGEGVPYG
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