prot_S-firma_F_contig10393.563.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10393.563.1
Unique Nameprot_S-firma_F_contig10393.563.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length59
Homology
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.000e-22
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 59
            PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ SRVA LVEGE+AT+LLKV
Sbjct:  193 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKV 251          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 59
            PE ALKGVGP++AEQLAKLG+ +VA+LLWHLPTGMVDRR+ S VA LVEGE+AT+LLKV
Sbjct:  123 PEDALKGVGPRKAEQLAKLGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKV 181          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C4UHB0_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C4UHB0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    3 KALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIAT 54
            K + GVGP+RAE LAK+GIR+V +LL+H P   +DRRQV +++ +V GE+ +
Sbjct:    9 KMIPGVGPQRAESLAKMGIRTVNDLLFHFPRKYIDRRQVKKISEVVPGEMVS 60          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.080e-9
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    4 ALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 59
            ALKG+GPK    L KL IR++A+LL HLPTG +DRR+   +A    G++ T+++KV
Sbjct:   23 ALKGIGPKMCAYLEKLDIRTIADLLLHLPTGYIDRRRSCPIADAEPGDVLTLIVKV 78          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A3M1JVB7_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JVB7_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 8.240e-9
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    5 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 59
            L GVG + A  LA++GI  V +LLWHLPTGMVDRR   RV    +G IAT+ ++V
Sbjct:   16 LPGVGGRTAAHLARMGIARVVDLLWHLPTGMVDRRHSPRVKDAGDGVIATLTVEV 70          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A7C1WJ74_9BACT (ATP-dependent DNA helicase RecG n=1 Tax=Candidatus Fraserbacteria bacterium TaxID=2268184 RepID=A0A7C1WJ74_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 8.250e-9
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 55
            P +  KGVG +RA+QLAKLGI ++ +LL++LP  M DR Q+ R+A L EGE  TV
Sbjct:   73 PVRYAKGVGERRAKQLAKLGIETIEDLLFYLPRRMEDRSQIKRIAQLREGERVTV 127          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A522YQU5_9ARCH (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Candidatus Nitrosotenuis sp. TaxID=2507556 RepID=A0A522YQU5_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    5 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 55
            LKGVGP+RAEQLA+LGI +V +LL+H P    DRR +  +  L EGE  T+
Sbjct:   13 LKGVGPRRAEQLARLGITTVKDLLFHFPVRYEDRRNIRSIDSLTEGETHTI 63          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A317MV21_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MV21_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 55
            P  ALKGVGP+ AE+LAKLG+  V +LL+HLPT   DR +V  +A L  GE A V
Sbjct:   11 PLTALKGVGPRLAERLAKLGLHCVEDLLFHLPTRYQDRTRVVPIASLAAGEPAVV 65          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A552X1H6_9GAMM (ATP-dependent DNA helicase RecG n=2 Tax=Aliidiomarina TaxID=1249554 RepID=A0A552X1H6_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    5 LKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATVLLKV 59
            LKGVGPK AE+LAKLG+RSV ++L+HLP    DR +++ +A +  G+ ATV+  V
Sbjct:   12 LKGVGPKMAERLAKLGLRSVQDVLFHLPLRYQDRTRITPIASMRVGDHATVVADV 66          
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Match: A0A381P692_9ZZZZ (ATP-dependent DNA helicase RecG n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381P692_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    1 PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEGEIATV 55
            P  AL G+G +RA +LAKLGIR+V +LLWH P    DR Q +   GLV+G+  TV
Sbjct:   38 PVAALPGIGGERAARLAKLGIRTVGDLLWHGPRRYEDRNQPNEAKGLVKGDTGTV 92          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10393.563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN8_ECTSI1.000e-2279.66RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE1.110e-2177.97ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A7C4UHB0_9BACT4.400e-951.92ATP-dependent DNA helicase RecG n=1 Tax=bacterium ... [more]
A0A836CEI0_9STRA6.080e-950.00ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
A0A3M1JVB7_9PROT8.240e-954.55ATP-dependent DNA helicase RecG n=1 Tax=Alphaprote... [more]
A0A7C1WJ74_9BACT8.250e-954.55ATP-dependent DNA helicase RecG n=1 Tax=Candidatus... [more]
A0A522YQU5_9ARCH1.110e-854.90ATP-dependent DNA helicase RecG (Fragment) n=1 Tax... [more]
A0A317MV21_9GAMM2.110e-856.36ATP-dependent DNA helicase RecG n=2 Tax=Plasticicu... [more]
A0A552X1H6_9GAMM2.880e-852.73ATP-dependent DNA helicase RecG n=2 Tax=Aliidiomar... [more]
A0A381P692_9ZZZZ2.880e-852.73ATP-dependent DNA helicase RecG n=1 Tax=marine met... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.20coord: 1..51
e-value: 3.0E-6
score: 29.1
IPR033454RecG, wedge domainPFAMPF17191RecG_wedgecoord: 3..55
e-value: 2.6E-10
score: 40.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10393contigS-firma_F_contig10393:904..1330 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10393.563.1mRNA_S-firma_F_contig10393.563.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10393 904..1330 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10393.563.1 ID=prot_S-firma_F_contig10393.563.1|Name=mRNA_S-firma_F_contig10393.563.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=59bp
PEKALKGVGPKRAEQLAKLGIRSVANLLWHLPTGMVDRRQVSRVAGLVEG
EIATVLLKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR033454RecG_wedge