prot_S-firma_F_contig10371.532.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_F_contig10371.532.1
Unique Name	prot_S-firma_F_contig10371.532.1
Type	polypeptide
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length	87

Homology

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: D8LCT3_ECTSI (Glycine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT3_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.990e-52
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQHHQDWLDFSWNWLKAIGLREDLMG 85
            MRPETAQGIFTNFKNVQQ+AR KVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQHHQDWLDFSWNWLK IGLREDLMG
Sbjct:  313 MRPETAQGIFTNFKNVQQSARAKVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQHHQDWLDFSWNWLKDIGLREDLMG 397

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A835YRJ7_9STRA (Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.940e-39
Identity = 70/94 (74.47%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFV-EEGDAWKQHHQDWLDFSWNWLKAIGLREDLMGK 86
            +RPETAQGIFTNFKNVQQTAR K+       GKAFRNEITPRNFIFRSREFEQMEVEYF+ ++ DAW+  HQ WLDFSW WL +IGLRE+LMG+
Sbjct:  200 LRPETAQGIFTNFKNVQQTARAKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEVEYFISDDDDAWRGEHQAWLDFSWQWLLSIGLREELMGR 293

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A7R9YDS6_9STRA (Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDS6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.020e-36
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTK-------VGKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLMGK 86
            +RPETAQGIF NFK  Q  AR K       +GKAFRNEITPRNFIFRSREFEQMEVEYF+  E D W+ HH+ W+DFSWNWLK IGLRE+LMGK
Sbjct:  235 LRPETAQGIFVNFKTTQNVARGKLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEVEYFIPPEDDIWRGHHEAWIDFSWNWLKQIGLREELMGK 328

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A0M0LPR4_9EUKA (Glycine--tRNA ligase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPR4_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 3.910e-34
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDA-WKQHHQDWLDFSWNWLKAIGLREDLMGK 86
            +RPETAQGIFTNFKNV  T R KV       GKAFRNEITPRNFIFRSREFEQME+EYF+++ DA W   H+ WL   WNWLK+IGLREDLM +
Sbjct:  298 LRPETAQGIFTNFKNVVATGRVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIDDQDATWPVEHERWLQTMWNWLKSIGLREDLMAR 391

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A7S0Q9X8_9CRYP (Glycine--tRNA ligase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0Q9X8_9CRYP)

HSP 1 Score: 123 bits (309), Expect = 2.890e-33
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLM 84
            +RPETAQGIF NFKNVQQTAR+K+       GKAFRNEITPRNFIFRSREFEQME+EYF+  + DAW +HH++W+     WL  IG+R DL+
Sbjct:   32 LRPETAQGIFVNFKNVQQTARSKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPDDDAWPKHHEEWIGACERWLADIGIRGDLI 123

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A7S1GSR2_HEMAN (Glycine--tRNA ligase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSR2_HEMAN)

HSP 1 Score: 125 bits (314), Expect = 4.360e-33
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTART-------KVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGD-AWKQHHQDWLDFSWNWLKAIGLREDLM 84
            +RPETAQGIF NFKNVQQTART       ++GKAFRNEITPRNFIFRSREFEQME+EYF+++ D  W   H++W+D  +NWL  IG+++DL+
Sbjct:   37 LRPETAQGIFVNFKNVQQTARTTLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIDDADETWPAAHKEWIDTCYNWLLDIGIKQDLI 128

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A7S3HM11_9STRA (Glycine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM11_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.820e-33
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLMGK 86
            +RPETAQGIFTNF  VQ+TAR K+       GKAFRNEITPRNFIFRSREFEQME+EYF+E + D W +H ++W++ SW WL ++G+ E  + K
Sbjct:   12 LRPETAQGIFTNFAAVQRTARMKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIEPQDDVWPKHLEEWIERSWQWLLSVGINESFLSK 105

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A7S1KDB6_9ALVE (Glycine--tRNA ligase n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KDB6_9ALVE)

HSP 1 Score: 128 bits (321), Expect = 1.350e-32
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLM 84
            +RPETAQGIF NFKNV QT+R KV       GKAFRNEI PRNFIFRSREFEQME+EYF+  + DAW ++++ W+  SW+WLK+IGLREDLM
Sbjct:  376 LRPETAQGIFVNFKNVAQTSRVKVPFGIAQIGKAFRNEINPRNFIFRSREFEQMEIEYFIPPDEDAWPEYYKQWIGESWDWLKSIGLREDLM 467

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: A0A0G4FCB5_VITBC (Glycine--tRNA ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FCB5_VITBC)

HSP 1 Score: 128 bits (321), Expect = 1.630e-32
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLM 84
            +RPETAQGIF NFKNV QT+R KV       GKAFRNEI PRNFIFRSREFEQME+EYF+  + DAW ++++ W+  SW+WLK+IGLREDLM
Sbjct:  740 LRPETAQGIFVNFKNVAQTSRVKVPFGIAQIGKAFRNEINPRNFIFRSREFEQMEIEYFIPPDEDAWPEYYKQWIGESWDWLKSIGLREDLM 831

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BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Match: W7TM99_9STRA (Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM99_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.750e-32
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0

Query:    1 MRPETAQGIFTNFKNVQQTARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQHHQDWLDFSWNWLKAIGLREDLMGK 86
            +RPETAQGIFTNFKNVQ T R KV       GKAFRNEITPRNFIFRSREFEQME+EYF+  E + W   +  W++ +W WL +IG+REDLMG+
Sbjct:  287 LRPETAQGIFTNFKNVQSTGRVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPEEEVWPDFYNKWIETAWQWLTSIGMREDLMGR 380

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig10371.532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCT3_ECTSI	7.990e-52	96.47	Glycine--tRNA ligase n=1 Tax=Ectocarpus siliculosu...	[more]
A0A835YRJ7_9STRA	4.940e-39	74.47	Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID...	[more]
A0A7R9YDS6_9STRA	1.020e-36	71.28	Glycine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A0M0LPR4_9EUKA	3.910e-34	69.15	Glycine--tRNA ligase n=1 Tax=Chrysochromulina tobi...	[more]
A0A7S0Q9X8_9CRYP	2.890e-33	65.22	Glycine--tRNA ligase (Fragment) n=1 Tax=Cryptomona...	[more]
A0A7S1GSR2_HEMAN	4.360e-33	64.13	Glycine--tRNA ligase n=1 Tax=Hemiselmis andersenii...	[more]
A0A7S3HM11_9STRA	4.820e-33	60.64	Glycine--tRNA ligase (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S1KDB6_9ALVE	1.350e-32	67.39	Glycine--tRNA ligase n=1 Tax=Vitrella brassicaform...	[more]
A0A0G4FCB5_VITBC	1.630e-32	67.39	Glycine--tRNA ligase n=1 Tax=Vitrella brassicaform...	[more]
W7TM99_9STRA	1.750e-32	64.89	Glycine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002315	Glycyl-tRNA synthetase	PRINTS	PR01043	TRNASYNTHGLY	coord: 42..52 score: 66.16 coord: 25..42 score: 66.05
None	No IPR available	GENE3D	3.30.930.10		coord: 1..85 e-value: 3.9E-28 score: 100.6
None	No IPR available	PANTHER	PTHR10745:SF19		coord: 1..83
None	No IPR available	SUPERFAMILY	55681	Class II aaRS and biotin synthetases	coord: 1..82
IPR027031	Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2	PANTHER	PTHR10745	GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2	coord: 1..83
IPR006195	Aminoacyl-tRNA synthetase, class II	PROSITE	PS50862	AA_TRNA_LIGASE_II	coord: 25..86 score: 10.393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig10371	contig	S-firma_F_contig10371:406..2772 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig10371.532.1	mRNA_S-firma_F_contig10371.532.1	Sphaerotrichia firma ET2_F female	mRNA	S-firma_F_contig10371 385..3353 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_F_contig10371.532.1 ID=prot_S-firma_F_contig10371.532.1|Name=mRNA_S-firma_F_contig10371.532.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=87bp
MRPETAQGIFTNFKNVQQTARTKVGKAFRNEITPRNFIFRSREFEQMEVE
YFVEEGDAWKQHHQDWLDFSWNWLKAIGLREDLMGK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006195	aa-tRNA-synth_II
IPR027031	Gly-tRNA_synthase/POLG2
IPR002315	tRNA-synt_gly