prot_S-firma_F_contig10366.520.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10366.520.1
Unique Nameprot_S-firma_F_contig10366.520.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length211
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.470e-20
Identity = 65/113 (57.52%), Postives = 69/113 (61.06%), Query Frame = 0 
Query:  119 GGERRPYLAGRSRPAMALGQATQEQQEKGATVDAGEGEPGGAAAAAVANAV-TTSNRTERGQRLRAVNWVKQ---------------------VRNELTSAEFALNLNGAGSG 209
            GG RRPYLAGRSRPAMALGQA Q +Q+ G    A     G   AA   NA+  T+NRTERGQRLRAVNWVKQ                     VRNELTSAEFALNLNGA  G
Sbjct:  143 GGARRPYLAGRSRPAMALGQAMQGRQDGGMAAAAAGXXXGXXEAAGGTNAILATANRTERGQRLRAVNWVKQGAAFMPLMGAACDGRASLSRQVRNELTSAEFALNLNGATRG 255
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.260e-15
Identity = 50/76 (65.79%), Postives = 53/76 (69.74%), Query Frame = 0 
Query:  134 MALGQATQEQQEKGATVDAGEGEPGGAAAAAVANAVTTSNRTERGQRLRAVNWVKQVRNELTSAEFALNLNGAGSG 209
            MALGQA Q +Q  G     G G   G AA      + T+NRTERGQRLRAVNWVKQVRNELTSAEFALNLNGA  G
Sbjct:    1 MALGQAMQGRQGGGVAAARGGGTGAGEAAGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRG 76
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.230e-7
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:  169 VTTSNRTERGQRLRAVNWVKQVRNELTSAEFALNLNGAGSG 209
            +T ++RTERGQ+LRA+NWVKQVRN+LTSAEFAL L+   SG
Sbjct:    3 MTAASRTERGQKLRALNWVKQVRNDLTSAEFALQLDQGLSG 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE5.470e-2057.52LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI1.260e-1565.79LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YNT1_9STRA5.230e-770.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10366contigS-firma_F_contig10366:3960..5079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10366.520.1mRNA_S-firma_F_contig10366.520.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10366 3960..5079 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10366.520.1 ID=prot_S-firma_F_contig10366.520.1|Name=mRNA_S-firma_F_contig10366.520.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp
MKQPQPQATALDGGLARRTRASDGTAGRNHVPSSGPPSSSSSRPTRRVRS
DVGVRGRRSGLYSSGGGGGLSASASTGNTNSMTADGVDSSPGGVGPAAAG
QITAGAAGAGTGGVGVGGGGERRPYLAGRSRPAMALGQATQEQQEKGATV
DAGEGEPGGAAAAAVANAVTTSNRTERGQRLRAVNWVKQVRNELTSAEFA
LNLNGAGSGGG
back to top