prot_S-firma_F_contig1034.486.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1034.486.1
Unique Nameprot_S-firma_F_contig1034.486.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length99
Homology
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BLAST of mRNA_S-firma_F_contig1034.486.1 vs. uniprot
Match: A0A6H5JIV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.010e-11
Identity = 45/101 (44.55%), Postives = 57/101 (56.44%), Query Frame = 0 
Query:    1 MKLAVALFLALVAPSA--AFVPSTSCRGGVTA---SRTRSINAWVSLILKVDEGCTWQLGNKKEKHEDEDGSVPRKAFSAAPTFEEFLKFKQAERGETELK 96
            MKL ++L +A VA S+  AF+P+TS R   TA   SR R      SL  K  +    QLG+  E  +D D      ++SA PTFEEFLKFKQAER   + K
Sbjct:    2 MKLVLSLLVAFVAASSTVAFLPATSLRYATTAIAASRLRRSTTSTSLSAKKQKSEKAQLGDVHEPEDDSDRQQSG-SYSAPPTFEEFLKFKQAERANEDQK 101
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1034.486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV3_9PHAE7.010e-1144.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.901

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1034contigS-firma_F_contig1034:25246..25952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1034.486.1mRNA_S-firma_F_contig1034.486.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1034 25246..25952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1034.486.1 ID=prot_S-firma_F_contig1034.486.1|Name=mRNA_S-firma_F_contig1034.486.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=99bp
MKLAVALFLALVAPSAAFVPSTSCRGGVTASRTRSINAWVSLILKVDEGC
TWQLGNKKEKHEDEDGSVPRKAFSAAPTFEEFLKFKQAERGETELKIP*
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