mRNA_S-firma_F_contig1034.486.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1034.486.1
Unique NamemRNA_S-firma_F_contig1034.486.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1034.486.1 vs. uniprot
Match: A0A6H5JIV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.010e-11
Identity = 45/101 (44.55%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    1 MKLAVALFLALVAPSA--AFVPSTSCRGGVTA---SRTRSINAWVSLILKVDEGCTWQLGNKKEKHEDEDGSVPRKAFSAAPTFEEFLKFKQAERGETELK 288
            MKL ++L +A VA S+  AF+P+TS R   TA   SR R      SL  K  +    QLG+  E  +D D      ++SA PTFEEFLKFKQAER   + K
Sbjct:    2 MKLVLSLLVAFVAASSTVAFLPATSLRYATTAIAASRLRRSTTSTSLSAKKQKSEKAQLGDVHEPEDDSDRQQSG-SYSAPPTFEEFLKFKQAERANEDQK 101
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1034.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV3_9PHAE7.010e-1144.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1034contigS-firma_F_contig1034:25246..25952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_000640.1
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.7004592-CDS-S-firma_F_contig1034:25245..253761622815565.7004592-CDS-S-firma_F_contig1034:25245..25376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 25246..25376 -
1696949420.1592956-CDS-S-firma_F_contig1034:25245..253761696949420.1592956-CDS-S-firma_F_contig1034:25245..25376Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 25246..25376 -
1622815565.7129107-CDS-S-firma_F_contig1034:25786..259521622815565.7129107-CDS-S-firma_F_contig1034:25786..25952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 25787..25952 -
1696949420.1713252-CDS-S-firma_F_contig1034:25786..259521696949420.1713252-CDS-S-firma_F_contig1034:25786..25952Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 25787..25952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1034.486.1prot_S-firma_F_contig1034.486.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1034 25246..25952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1034.486.1

>prot_S-firma_F_contig1034.486.1 ID=prot_S-firma_F_contig1034.486.1|Name=mRNA_S-firma_F_contig1034.486.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=99bp
MKLAVALFLALVAPSAAFVPSTSCRGGVTASRTRSINAWVSLILKVDEGC
TWQLGNKKEKHEDEDGSVPRKAFSAAPTFEEFLKFKQAERGETELKIP*
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mRNA from alignment at S-firma_F_contig1034:25246..25952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1034.486.1 ID=mRNA_S-firma_F_contig1034.486.1|Name=mRNA_S-firma_F_contig1034.486.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=707bp|location=Sequence derived from alignment at S-firma_F_contig1034:25246..25952- (Sphaerotrichia firma ET2_F female)
ATGAAGCTCGCAGTTGCGCTCTTCCTTGCCCTCGTGGCTCCGAGTGCAGC
ATTCGTGCCCTCCACCTCTTGCCGTGGCGGCGTCACCGCTTCCCGCACGC
GGTCCATCAACGCCTGGGTGAGCCTGATTTTGAAAGTGGACGAGGGTTGC
ACTTGGCAGCTTGGTAGTCTAGGCTCGCACGGCGTGGCGGGGTGGCAAGG
TCTGGTTGTGCAAAGCAAGGGCAGGAGAGCAGGCTGCATTTTAGCAGGGC
CAACCACTTTTTTAACGTTGTGCTAGGTAACAAATGCGTTGGGAACGGTC
TTGAGCATACTGCACCTCGGGTGACTGCGATGGGATCCACACACACGCGG
CGTCTGACGCCCCTGCTGCGTGTCGACTAGACTATGCACAAGCTAAGAAC
TACCGCACACCTTCCTCTCTCAACAACGCCAACGTGCTTTAGGCCACGCC
TCTCCCTTTGGGTTAAAATCTCTCCTGTGCGGCATCGTACGTTGTTGGTG
CCTGCTTTCGTGTCCTTTGTAAAGAGAGCCAAGGAGGACAACCTGACGGA
CGCCTCTAACACGGCCGATACGCAAGATAAGAAGGAGAAGCACGAAGACG
AAGATGGATCGGTACCTCGCAAGGCGTTCTCTGCTGCCCCTACCTTCGAG
GAATTCCTCAAGTTCAAGCAGGCCGAGAGAGGAGAAACGGAGCTTAAGAT
CCCGTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig1034:25246..25952-

>mRNA_S-firma_F_contig1034.486.1 ID=mRNA_S-firma_F_contig1034.486.1|Name=mRNA_S-firma_F_contig1034.486.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=594bp|location=Sequence derived from alignment at S-firma_F_contig1034:25246..25952- (Sphaerotrichia firma ET2_F female)
ATGAAGCTCGCAGTTGCGCTCTTCCTTGCCCTCGTGGCTCCGAGTGCAGC
ATTCGTGCCCTCCACCTCTTGCCGTGGCGGCGTCACCGCTTCCCGCACGC
GGTCCATCAACGCCTGGGTGAGCCTGATTTTGAAAGTGGACGAGGGTTGC
ACTTGGCAGCTTGGTAATGAAGCTCGCAGTTGCGCTCTTCCTTGCCCTCG
TGGCTCCGAGTGCAGCATTCGTGCCCTCCACCTCTTGCCGTGGCGGCGTC
ACCGCTTCCCGCACGCGGTCCATCAACGCCTGGGTGAGCCTGATTTTGAA
AGTGGACGAGGGTTGCACTTGGCAGCTTGGTAATAAGAAGGAGAAGCACG
AAGACGAAGATGGATCGGTACCTCGCAAGGCGTTCTCTGCTGCCCCTACC
TTCGAGGAATTCCTCAAGTTCAAGCAGGCCGAGAGAGGAGAAACGGAGCT
TAAGATCCCGTAAATAAGAAGGAGAAGCACGAAGACGAAGATGGATCGGT
ACCTCGCAAGGCGTTCTCTGCTGCCCCTACCTTCGAGGAATTCCTCAAGT
TCAAGCAGGCCGAGAGAGGAGAAACGGAGCTTAAGATCCCGTAA
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