prot_S-firma_F_contig10337.479.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10337.479.1
Unique Nameprot_S-firma_F_contig10337.479.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length138
Homology
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.550e-35
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    3 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 137
            A+   FC  CGSIL LP+TN IVC  C   CR+ DLP+L   T S+ RPEP+W+KE    +++E  G   ATV                   EE CPKC H  M FYT+Q+RS DEGQTVFY C KCGH+ S +T
Sbjct:   11 AAGPSFCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENV--QSQEVTGPSRATV-------------------EETCPKCGHPEMEFYTLQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 1.290e-33
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 0
Query:    2 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 137
            TA    FC  CG+IL LP+TN IVC  C   C+++DLP L   T S  RPEP+W+K                       + +   +   R  VEE CPKC++ +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   10 TAGGPSFCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKN---------------------AIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.830e-33
Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 0
Query:    3 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 137
            A    FC  CG+IL LP+TN IVC  C   CR+ DLP+L   T S  RPEP+W+KE    +++E  G   ATV                   EE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   11 APGPSFCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEI--QSQEVTGPARATV-------------------EETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.590e-33
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 0
Query:    8 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 137
            FC  CG+IL LP+TN IVC  C   CR+ DLP+L   T S+ RPEP+W+K+                      + + N +   R  VEE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQ---------------------DIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 117 bits (292), Expect = 3.540e-31
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    2 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 136
            TA+   FC  CG+IL  PDTN IVC  C   CR++DLP+L V T S  +P P+WL             K+M+ V           +   R  VEE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   11 TATGPAFCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWL----------DAEKVMSEV-----------TGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: K3X016_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD)

HSP 1 Score: 115 bits (288), Expect = 1.350e-30
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 0
Query:    2 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 136
            T +   FC  CG+IL  PDTN IVC  C   C+++DLP+L V T S  +P P+WLK  K          +M  V           +   R  VEE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:    9 TTTGPAFCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWLKAEK----------VMTEV-----------TGPARATVEETCPKCGNLEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 122          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 115 bits (288), Expect = 1.430e-30
Identity = 60/133 (45.11%), Postives = 71/133 (53.38%), Query Frame = 0
Query:    4 SNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 136
            S   FC  CG+IL  PDTN IVC  C   CR++D P+L   T S  RP+P+WL    G    E  G   ATV                   EE CPKC +  M FYT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   13 SGPAFCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWLDAEVG--MSEVTGPARATV-------------------EETCPKCGNREMEFYTLQLRSADEGQTVFYECKKCGHKSSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 115 bits (287), Expect = 2.030e-30
Identity = 60/129 (46.51%), Postives = 71/129 (55.04%), Query Frame = 0
Query:    8 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 136
            FC  CG+IL  PDTN IVC  C   CR++DLP+L V T S  RP P+WL    G    E  G   ATV                   EE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVG--MSEVTGPARATV-------------------EETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 5.300e-30
Identity = 61/136 (44.85%), Postives = 75/136 (55.15%), Query Frame = 0
Query:    2 TASNAP-FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 136
            TA+  P FC  CG+IL  PDTN IVC  C   C +++LP+L V T S  +P P+WLK  +     E  G   ATV                   EE CPKC +  M +YTMQ+RS DEGQTVFY C KCGH+ S +
Sbjct:    7 TATTGPAFCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQS--VNEVKGPARATV-------------------EETCPKCGNPEMDYYTMQLRSADEGQTVFYECKKCGHKFSVN 121          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: D8M1K7_BLAHO (DNA-directed RNA polymerase subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1K7_BLAHO)

HSP 1 Score: 110 bits (274), Expect = 1.740e-28
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 0
Query:    1 VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCG 130
            V  +N  FC  CGSIL LP++  I C  C   C+  DL N  + T+S P+P P+W+ E +     + G                      R  V+EECP+C + +MSFYT+Q+RSVDEG TVFY CLKCG
Sbjct:   13 VRVNNVEFCKVCGSILDLPESGTIECGICHWKCQMSDLSNTTIITSSHPKPVPQWVHELQQQEKIQVGPT--------------------RALVDEECPRCKNPQMSFYTLQLRSVDEGSTVFYKCLKCG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024TQD9_9STRA5.550e-3548.15DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A067CLZ5_SAPPC1.290e-3344.12DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A485LF44_9STRA1.830e-3347.41DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A6G0WT35_9STRA2.590e-3346.15DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE3.540e-3144.44DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
K3X016_GLOUD1.350e-3043.70DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A484EDY4_BRELC1.430e-3045.11DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A0N7L402_PLAHL2.030e-3046.51DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A2D4BKP7_PYTIN5.300e-3044.85DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
D8M1K7_BLAHO1.740e-2841.54DNA-directed RNA polymerase subunit n=1 Tax=Blasto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 96..135
e-value: 2.8E-15
score: 66.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 97..132
e-value: 3.0E-17
score: 62.2
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 94..134
score: 13.527
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 88..137
e-value: 2.0E-15
score: 55.2
coord: 6..96
e-value: 1.3E-6
score: 26.9
NoneNo IPR availableGENE3D2.20.25.10coord: 85..135
e-value: 2.9E-18
score: 66.9
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..136
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..136
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 94..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10337contigS-firma_F_contig10337:2141..2606 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10337.479.1mRNA_S-firma_F_contig10337.479.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10337 2141..2606 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10337.479.1 ID=prot_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp
VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPR
PEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPK
CHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001222Znf_TFIIS