mRNA_S-firma_F_contig10337.479.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10337.479.1
Unique NamemRNA_S-firma_F_contig10337.479.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.550e-35
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    7 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
            A+   FC  CGSIL LP+TN IVC  C   CR+ DLP+L   T S+ RPEP+W+KE    +++E  G   ATV                   EE CPKC H  M FYT+Q+RS DEGQTVFY C KCGH+ S +T
Sbjct:   11 AAGPSFCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENV--QSQEVTGPSRATV-------------------EETCPKCGHPEMEFYTLQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 1.290e-33
Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
            TA    FC  CG+IL LP+TN IVC  C   C+++DLP L   T S  RPEP+W+K                       + +   +   R  VEE CPKC++ +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   10 TAGGPSFCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKN---------------------AIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.830e-33
Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    7 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
            A    FC  CG+IL LP+TN IVC  C   CR+ DLP+L   T S  RPEP+W+KE    +++E  G   ATV                   EE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   11 APGPSFCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEI--QSQEVTGPARATV-------------------EETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.590e-33
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   22 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
            FC  CG+IL LP+TN IVC  C   CR+ DLP+L   T S+ RPEP+W+K+                      + + N +   R  VEE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct:   16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQ---------------------DIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 117 bits (292), Expect = 3.540e-31
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
            TA+   FC  CG+IL  PDTN IVC  C   CR++DLP+L V T S  +P P+WL             K+M+ V           +   R  VEE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   11 TATGPAFCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWL----------DAEKVMSEV-----------TGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: K3X016_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD)

HSP 1 Score: 115 bits (288), Expect = 1.350e-30
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
            T +   FC  CG+IL  PDTN IVC  C   C+++DLP+L V T S  +P P+WLK  K          +M  V           +   R  VEE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:    9 TTTGPAFCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWLKAEK----------VMTEV-----------TGPARATVEETCPKCGNLEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 122          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 115 bits (288), Expect = 1.430e-30
Identity = 60/133 (45.11%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   10 SNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
            S   FC  CG+IL  PDTN IVC  C   CR++D P+L   T S  RP+P+WL    G    E  G   ATV                   EE CPKC +  M FYT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   13 SGPAFCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWLDAEVG--MSEVTGPARATV-------------------EETCPKCGNREMEFYTLQLRSADEGQTVFYECKKCGHKSSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 115 bits (287), Expect = 2.030e-30
Identity = 60/129 (46.51%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   22 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
            FC  CG+IL  PDTN IVC  C   CR++DLP+L V T S  RP P+WL    G    E  G   ATV                   EE CPKC +  M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVG--MSEVTGPARATV-------------------EETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 5.300e-30
Identity = 61/136 (44.85%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    4 TASNAP-FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
            TA+  P FC  CG+IL  PDTN IVC  C   C +++LP+L V T S  +P P+WLK  +     E  G   ATV                   EE CPKC +  M +YTMQ+RS DEGQTVFY C KCGH+ S +
Sbjct:    7 TATTGPAFCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQS--VNEVKGPARATV-------------------EETCPKCGNPEMDYYTMQLRSADEGQTVFYECKKCGHKFSVN 121          
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: D8M1K7_BLAHO (DNA-directed RNA polymerase subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1K7_BLAHO)

HSP 1 Score: 110 bits (274), Expect = 1.740e-28
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCG 390
            V  +N  FC  CGSIL LP++  I C  C   C+  DL N  + T+S P+P P+W+ E +     + G                      R  V+EECP+C + +MSFYT+Q+RSVDEG TVFY CLKCG
Sbjct:   13 VRVNNVEFCKVCGSILDLPESGTIECGICHWKCQMSDLSNTTIITSSHPKPVPQWVHELQQQEKIQVGPT--------------------RALVDEECPRCKNPQMSFYTLQLRSVDEGSTVFYKCLKCG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024TQD9_9STRA5.550e-3548.15DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A067CLZ5_SAPPC1.290e-3344.12DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A485LF44_9STRA1.830e-3347.41DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A6G0WT35_9STRA2.590e-3346.15DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE3.540e-3144.44DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
K3X016_GLOUD1.350e-3043.70DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A484EDY4_BRELC1.430e-3045.11DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A0N7L402_PLAHL2.030e-3046.51DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A2D4BKP7_PYTIN5.300e-3044.85DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
D8M1K7_BLAHO1.740e-2841.54DNA-directed RNA polymerase subunit n=1 Tax=Blasto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10337contigS-firma_F_contig10337:2141..2606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008875582.1
Preferred nameZNRD1
PFAMsRNA_POL_M_15KD,TFIIS_C
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue9.1e-36
EggNOG OGsCOG1594@1|root,KOG2907@2759|Eukaryota
Descriptiontermination of RNA polymerase I transcription
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.8877597-CDS-S-firma_F_contig10337:2140..24451622815564.8877597-CDS-S-firma_F_contig10337:2140..2445Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10337 2141..2445 -
1696949419.611166-CDS-S-firma_F_contig10337:2140..24451696949419.611166-CDS-S-firma_F_contig10337:2140..2445Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10337 2141..2445 -
1622815564.8993604-CDS-S-firma_F_contig10337:2497..26061622815564.8993604-CDS-S-firma_F_contig10337:2497..2606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10337 2498..2606 -
1696949419.6229773-CDS-S-firma_F_contig10337:2497..26061696949419.6229773-CDS-S-firma_F_contig10337:2497..2606Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10337 2498..2606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10337.479.1prot_S-firma_F_contig10337.479.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10337 2141..2606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10337.479.1

>prot_S-firma_F_contig10337.479.1 ID=prot_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp
VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPR
PEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPK
CHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT*
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mRNA from alignment at S-firma_F_contig10337:2141..2606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10337.479.1 ID=mRNA_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=466bp|location=Sequence derived from alignment at S-firma_F_contig10337:2141..2606- (Sphaerotrichia firma ET2_F female)
GTCACGGCATCAAATGCGCCCTTTTGTGCCGCCTGCGGCTCCATCCTCCG ACTCCCCGACACAAACCGTATCGTGTGCGACGGGTGCAGGGCAGTGTGTC GCTTCAAAGGTGCGCTACTTTCGCTTGGGCGGGCTCCCGCCGCCGCTCAC CACGTGTGCAGACCTGCCGAACCTGCGGGTGGAGACAACCAGTCGCCCAC GCCCAGAGCCTGAGTGGCTGAAGGAGTACAAGGGCGACCGCGCGAAGGAG TCCGGGGGCAAGATTATGGCGACGGTGGGCGTGGGGTGCGGGGTGTGCAC GCTAAACGCCTCACGCTTACTGCGTGTGCAGGTCGAGGAGGAGTGCCCTA AGTGCCACCACAACCGCATGAGCTTCTACACGATGCAGATGCGGTCCGTG GACGAAGGACAAACCGTGTTCTACACCTGCCTCAAGTGTGGCCACCAAAA GTCGACAGACACATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10337:2141..2606-

>mRNA_S-firma_F_contig10337.479.1 ID=mRNA_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_F_contig10337:2141..2606- (Sphaerotrichia firma ET2_F female)
GTCACGGCATCAAATGCGCCCTTTTGTGCCGCCTGCGGCTCCATCCTCCG
ACTCCCCGACACAAACCGTATCGTGTGCGACGGGTGCAGGGCAGTGTGTC
GCTTCAAAGGTCACGGCATCAAATGCGCCCTTTTGTGCCGCCTGCGGCTC
CATCCTCCGACTCCCCGACACAAACCGTATCGTGTGCGACGGGTGCAGGG
CAGTGTGTCGCTTCAAAGACCTGCCGAACCTGCGGGTGGAGACAACCAGT
CGCCCACGCCCAGAGCCTGAGTGGCTGAAGGAGTACAAGGGCGACCGCGC
GAAGGAGTCCGGGGGCAAGATTATGGCGACGGTGGGCGTGGGGTGCGGGG
TGTGCACGCTAAACGCCTCACGCTTACTGCGTGTGCAGGTCGAGGAGGAG
TGCCCTAAGTGCCACCACAACCGCATGAGCTTCTACACGATGCAGATGCG
GTCCGTGGACGAAGGACAAACCGTGTTCTACACCTGCCTCAAGTGTGGCC
ACCAAAAGTCGACAGACACATGAACCTGCCGAACCTGCGGGTGGAGACAA
CCAGTCGCCCACGCCCAGAGCCTGAGTGGCTGAAGGAGTACAAGGGCGAC
CGCGCGAAGGAGTCCGGGGGCAAGATTATGGCGACGGTGGGCGTGGGGTG
CGGGGTGTGCACGCTAAACGCCTCACGCTTACTGCGTGTGCAGGTCGAGG
AGGAGTGCCCTAAGTGCCACCACAACCGCATGAGCTTCTACACGATGCAG
ATGCGGTCCGTGGACGAAGGACAAACCGTGTTCTACACCTGCCTCAAGTG
TGGCCACCAAAAGTCGACAGACACATGA
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