mRNA_S-firma_F_contig10337.479.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.550e-35 Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 7 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
A+ FC CGSIL LP+TN IVC C CR+ DLP+L T S+ RPEP+W+KE +++E G ATV EE CPKC H M FYT+Q+RS DEGQTVFY C KCGH+ S +T
Sbjct: 11 AAGPSFCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENV--QSQEVTGPSRATV-------------------EETCPKCGHPEMEFYTLQLRSADEGQTVFYECKKCGHRYSVNT 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC) HSP 1 Score: 123 bits (308), Expect = 1.290e-33 Identity = 60/136 (44.12%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
TA FC CG+IL LP+TN IVC C C+++DLP L T S RPEP+W+K + + + R VEE CPKC++ +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct: 10 TAGGPSFCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKN---------------------AIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.830e-33 Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 7 ASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
A FC CG+IL LP+TN IVC C CR+ DLP+L T S RPEP+W+KE +++E G ATV EE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct: 11 APGPSFCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEI--QSQEVTGPARATV-------------------EETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.590e-33 Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query: 22 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTDT 411
FC CG+IL LP+TN IVC C CR+ DLP+L T S+ RPEP+W+K+ + + N + R VEE CPKC + +M FYTMQ+RS DEGQTVFY C KCGH+ S +T
Sbjct: 16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQ---------------------DIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVNT 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE) HSP 1 Score: 117 bits (292), Expect = 3.540e-31 Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
TA+ FC CG+IL PDTN IVC C CR++DLP+L V T S +P P+WL K+M+ V + R VEE CPKC + M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct: 11 TATGPAFCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWL----------DAEKVMSEV-----------TGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: K3X016_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X016_GLOUD) HSP 1 Score: 115 bits (288), Expect = 1.350e-30 Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 4 TASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
T + FC CG+IL PDTN IVC C C+++DLP+L V T S +P P+WLK K +M V + R VEE CPKC + M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct: 9 TTTGPAFCPHCGTILDHPDTNNIVCSACEYRCQYQDLPSLSVVTYSEDKPAPKWLKAEK----------VMTEV-----------TGPARATVEETCPKCGNLEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 122
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC) HSP 1 Score: 115 bits (288), Expect = 1.430e-30 Identity = 60/133 (45.11%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 10 SNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
S FC CG+IL PDTN IVC C CR++D P+L T S RP+P+WL G E G ATV EE CPKC + M FYT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct: 13 SGPAFCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWLDAEVG--MSEVTGPARATV-------------------EETCPKCGNREMEFYTLQLRSADEGQTVFYECKKCGHKSSVN 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL) HSP 1 Score: 115 bits (287), Expect = 2.030e-30 Identity = 60/129 (46.51%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 22 FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
FC CG+IL PDTN IVC C CR++DLP+L V T S RP P+WL G E G ATV EE CPKC + M +YT+Q+RS DEGQTVFY C KCGH+ S +
Sbjct: 17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVG--MSEVTGPARATV-------------------EETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVN 124
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN) HSP 1 Score: 114 bits (284), Expect = 5.300e-30 Identity = 61/136 (44.85%), Postives = 75/136 (55.15%), Query Frame = 1
Query: 4 TASNAP-FCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCGHQKSTD 408
TA+ P FC CG+IL PDTN IVC C C +++LP+L V T S +P P+WLK + E G ATV EE CPKC + M +YTMQ+RS DEGQTVFY C KCGH+ S +
Sbjct: 7 TATTGPAFCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQS--VNEVKGPARATV-------------------EETCPKCGNPEMDYYTMQLRSADEGQTVFYECKKCGHKFSVN 121
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Match: D8M1K7_BLAHO (DNA-directed RNA polymerase subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1K7_BLAHO) HSP 1 Score: 110 bits (274), Expect = 1.740e-28 Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 1 VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRPEPEWLKEYKGDRAKESGGKIMATVGVGCGVCTLNASRLLRVQVEEECPKCHHNRMSFYTMQMRSVDEGQTVFYTCLKCG 390
V +N FC CGSIL LP++ I C C C+ DL N + T+S P+P P+W+ E + + G R V+EECP+C + +MSFYT+Q+RSVDEG TVFY CLKCG
Sbjct: 13 VRVNNVEFCKVCGSILDLPESGTIECGICHWKCQMSDLSNTTIITSSHPKPVPQWVHELQQQEKIQVGPT--------------------RALVDEECPRCKNPQMSFYTLQLRSVDEGSTVFYKCLKCG 122 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10337.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10337.479.1 >prot_S-firma_F_contig10337.479.1 ID=prot_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp VTASNAPFCAACGSILRLPDTNRIVCDGCRAVCRFKDLPNLRVETTSRPRback to top mRNA from alignment at S-firma_F_contig10337:2141..2606- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10337.479.1 ID=mRNA_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=466bp|location=Sequence derived from alignment at S-firma_F_contig10337:2141..2606- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10337:2141..2606- >mRNA_S-firma_F_contig10337.479.1 ID=mRNA_S-firma_F_contig10337.479.1|Name=mRNA_S-firma_F_contig10337.479.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_F_contig10337:2141..2606- (Sphaerotrichia firma ET2_F female)back to top |