prot_S-firma_F_contig10281.416.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10281.416.1
Unique Nameprot_S-firma_F_contig10281.416.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length136
Homology
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BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.100e-54
Identity = 97/130 (74.62%), Postives = 104/130 (80.00%), Query Frame = 0 
Query:    1 NELSRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAF---GGGAGTKRSLESSGEDYEGDYG----FADGGSKRFSRRAVK 123
            N   R RSTEGAV G+HRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSG RNQPCV+RWCRTKAAQR++DK +K  RRK+A    G G GTKR LESSGEDYEGDYG    +AD   KRF RR  K
Sbjct:  902 NGTPRVRSTEGAVEGFHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLESSGEDYEGDYGGGDVYAD---KRFRRRTTK 1028
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BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.910e-52
Identity = 97/139 (69.78%), Postives = 105/139 (75.54%), Query Frame = 0 
Query:    1 NELSRARSTEGAVLGYHR---------RLGANERCNQCTGCLLPNCGKCWGCQHRVEYGGSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAF---GGGAGTKRSLESSGEDYEGDYG----FADGGSKRFSRRAVK 123
            NE  R RSTEGAV G+HR         RLGANERCNQCTGCLLPNCGKCWGCQHR+EYGGSG RNQPCV+RWCRTKAAQR++DK +K  RRK+A    G G GTKR LE+SGEDYEGDYG    FAD   KRF RR  K
Sbjct:  540 NEPPRVRSTEGAVEGFHRNPRQTAPRRRLGANERCNQCTGCLLPNCGKCWGCQHRIEYGGSGQRNQPCVDRWCRTKAAQRESDKLDKAARRKRAMAVGGSGVGTKRPLEASGEDYEGDYGGGDVFAD---KRFRRRTPK 675
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10281.416.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE1.100e-5474.62CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI2.910e-5269.78CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 22..64
e-value: 2.1E-8
score: 34.0
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 15..65
score: 10.341

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10281contigS-firma_F_contig10281:3..2138 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10281.416.1mRNA_S-firma_F_contig10281.416.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10281 2..2138 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10281.416.1 ID=prot_S-firma_F_contig10281.416.1|Name=mRNA_S-firma_F_contig10281.416.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
NELSRARSTEGAVLGYHRRLGANERCNQCTGCLLPNCGKCWGCQHRVEYG
GSGHRNQPCVERWCRTKAAQRDADKAEKGRRRKQAFGGGAGTKRSLESSG
EDYEGDYGFADGGSKRFSRRAVKAGGAGAGAPGRGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002857Znf_CXXC