prot_S-firma_F_contig10223.346.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10223.346.1
Unique Nameprot_S-firma_F_contig10223.346.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length347
Homology
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.470e-30
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0
Query:   38 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDEVHP 103
            RVGGVA+ATCCHHVCNWRDY GR+FL++QGF ARDF+AMRRISAWISLEPDAG RKNN+YPD+ HP
Sbjct:  341 RVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHP 406          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.950e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   38 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDEVHPAAAAAVDSTPMALPPPFSGKTLAAAA 129
            RVGGVA+ATCCHHVCNWRDY GR+FL +QGF ARDF+AMRRISAWISLEPDAG RKNN+YPD+ HP    ++ S P  +P    G+T + AA
Sbjct:  415 RVGGVAIATCCHHVCNWRDYVGRDFLMQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTFSL-SFPRKIP----GETASVAA 501          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A1S3MPY5_SALSA (tRNA:m(4)X modification enzyme TRM13 n=18 Tax=Salmonidae TaxID=8015 RepID=A0A1S3MPY5_SALSA)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   38 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  327 RVGGVAIALCCHHRCDWRHYVGKEFFKEKGLGASEFAAFLRMSSWAT 373          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A1S3MP39_SALSA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3MP39_SALSA)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   38 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  328 RVGGVAIALCCHHRCDWRHYVGKEFFKEKGLGASEFAAFLRMSSWAT 374          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A6F8ZT57_9TELE (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F8ZT57_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   38 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  498 RVGGVAIALCCHHRCDWRHYVGKEFFKERGLGASEFAAFLRMSSWAT 544          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: UPI001C08BF9D (tRNA:m(4)X modification enzyme TRM13 homolog n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C08BF9D)

HSP 1 Score: 62.0 bits (149), Expect = 6.000e-7
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   39 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            VGGVA+A CCHH C+W+ Y G+EF  ++G  A +F A +R+S+W +
Sbjct:  314 VGGVAIALCCHHRCDWQHYVGQEFFRQRGLGAAEFGAFQRMSSWAT 359          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A3P8XCV1_ESOLU (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XCV1_ESOLU)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0
Query:   39 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            VGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  329 VGGVAIALCCHHRCDWRHYVGKEFFKDRGLGAPEFAAFLRMSSWAT 374          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: F7EU89_XENTR (tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=F7EU89_XENTR)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 0
Query:   39 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLE---PDAGTRKNNKYPDEVHPA 104
            VGG+A+A CCHH C+W  Y GREF    G   R+F   +R+S+W +     P    + + +   E H A
Sbjct:  329 VGGIAIALCCHHRCDWHHYVGREFFQSLGLDQREFSLFQRMSSWATCGMRLPAKAIQSDEQMESEEHDA 397          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: C1MVU5_MICPC (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVU5_MICPC)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   41 GVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 84
            GVA+ATCCHH C+WR Y  + F+ R GFK+ +F  + ++S+W +
Sbjct:  203 GVAIATCCHHRCDWRAYVNKAFVKRLGFKSAEFALLAKMSSWAT 246          
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: S8DSX7_9LAMI (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DSX7_9LAMI)

HSP 1 Score: 60.1 bits (144), Expect = 1.830e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   41 GVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGT 91
            G+A ATCCHH+C W+ Y  +EF+S  GF   DFDA+   ++W +++ D G+
Sbjct:  298 GLAFATCCHHLCQWKTYINKEFISDMGFSKEDFDAISWFTSW-AVDSDHGS 347          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI4.470e-3083.33tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE7.950e-3067.39tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A1S3MPY5_SALSA1.050e-753.19tRNA:m(4)X modification enzyme TRM13 n=18 Tax=Salm... [more]
A0A1S3MP39_SALSA1.050e-753.19tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Salmo... [more]
A0A6F8ZT57_9TELE1.280e-753.19tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
UPI001C08BF9D6.000e-750.00tRNA:m(4)X modification enzyme TRM13 homolog n=1 T... [more]
A0A3P8XCV1_ESOLU1.050e-652.17tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Esox ... [more]
F7EU89_XENTR1.390e-637.68tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Xenop... [more]
C1MVU5_MICPC1.700e-647.73tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
S8DSX7_9LAMI1.830e-645.10tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007871Methyltransferase TRM13PFAMPF05206TRM13coord: 36..91
e-value: 1.7E-14
score: 54.0
IPR039044tRNA:m(4)X modification enzyme Trm13PANTHERPTHR12998UNCHARACTERIZEDcoord: 35..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10223contigS-firma_F_contig10223:1985..3487 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10223.346.1mRNA_S-firma_F_contig10223.346.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10223 1985..3487 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10223.346.1 ID=prot_S-firma_F_contig10223.346.1|Name=mRNA_S-firma_F_contig10223.346.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=347bp
MLTLSDTEKPIPLHERGTGGVDGGGGGGGTAAATAASRVGGVAVATCCHH
VCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDE
VHPAAAAAVDSTPMALPPPFSGKTLAAAAPPTITEEDVADGGDVEYAAAD
AAVSTIPERPEKTVGNHQPGGVGAEDHLVRVQHWAATSEGERQRRPGGGT
NEGIPSSLGAAPPPPPSPTTARTLPPSRSPAGAPQASLPPTPAAAAAVTS
PRTDQSAARNAADGGGGDDDDDDDDDHRQSNHAPPPVQVTPADAARTTPP
LAAGVAAAVVAARVPKPLLALGGLTPAEKARAARECKRLIDRGRRAF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039044Trm13
IPR007871Methyltransferase_TRM13