mRNA_S-firma_F_contig10223.346.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10223.346.1
Unique NamemRNA_S-firma_F_contig10223.346.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.470e-30
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  112 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDEVHP 309
            RVGGVA+ATCCHHVCNWRDY GR+FL++QGF ARDF+AMRRISAWISLEPDAG RKNN+YPD+ HP
Sbjct:  341 RVGGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHP 406
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BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.950e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:  112 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDEVHPAAAAAVDSTPMALPPPFSGKTLAAAA 387
            RVGGVA+ATCCHHVCNWRDY GR+FL +QGF ARDF+AMRRISAWISLEPDAG RKNN+YPD+ HP    ++ S P  +P    G+T + AA
Sbjct:  415 RVGGVAIATCCHHVCNWRDYVGRDFLMQQGFSARDFEAMRRISAWISLEPDAGARKNNRYPDDRHPGVTFSL-SFPRKIP----GETASVAA 501
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A1S3MPY5_SALSA (tRNA:m(4)X modification enzyme TRM13 n=18 Tax=Salmonidae TaxID=8015 RepID=A0A1S3MPY5_SALSA)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  112 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  327 RVGGVAIALCCHHRCDWRHYVGKEFFKEKGLGASEFAAFLRMSSWAT 373
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A1S3MP39_SALSA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3MP39_SALSA)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  112 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  328 RVGGVAIALCCHHRCDWRHYVGKEFFKEKGLGASEFAAFLRMSSWAT 374
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A6F8ZT57_9TELE (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F8ZT57_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  112 RVGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            RVGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  498 RVGGVAIALCCHHRCDWRHYVGKEFFKERGLGASEFAAFLRMSSWAT 544
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: UPI001C08BF9D (tRNA:m(4)X modification enzyme TRM13 homolog n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C08BF9D)

HSP 1 Score: 62.0 bits (149), Expect = 6.000e-7
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  115 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            VGGVA+A CCHH C+W+ Y G+EF  ++G  A +F A +R+S+W +
Sbjct:  314 VGGVAIALCCHHRCDWQHYVGQEFFRQRGLGAAEFGAFQRMSSWAT 359
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: A0A3P8XCV1_ESOLU (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XCV1_ESOLU)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  115 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            VGGVA+A CCHH C+WR Y G+EF   +G  A +F A  R+S+W +
Sbjct:  329 VGGVAIALCCHHRCDWRHYVGKEFFKDRGLGAPEFAAFLRMSSWAT 374
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: F7EU89_XENTR (tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=F7EU89_XENTR)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:  115 VGGVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLE---PDAGTRKNNKYPDEVHPA 312
            VGG+A+A CCHH C+W  Y GREF    G   R+F   +R+S+W +     P    + + +   E H A
Sbjct:  329 VGGIAIALCCHHRCDWHHYVGREFFQSLGLDQREFSLFQRMSSWATCGMRLPAKAIQSDEQMESEEHDA 397
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: C1MVU5_MICPC (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVU5_MICPC)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  121 GVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWIS 252
            GVA+ATCCHH C+WR Y  + F+ R GFK+ +F  + ++S+W +
Sbjct:  203 GVAIATCCHHRCDWRAYVNKAFVKRLGFKSAEFALLAKMSSWAT 246
[Close]
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Match: S8DSX7_9LAMI (tRNA:m(4)X modification enzyme TRM13 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DSX7_9LAMI)

HSP 1 Score: 60.1 bits (144), Expect = 1.830e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  121 GVAVATCCHHVCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGT 273
            G+A ATCCHH+C W+ Y  +EF+S  GF   DFDA+   ++W +++ D G+
Sbjct:  298 GLAFATCCHHLCQWKTYINKEFISDMGFSKEDFDAISWFTSW-AVDSDHGS 347
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10223.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI4.470e-3083.33tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE7.950e-3067.39tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A1S3MPY5_SALSA1.050e-753.19tRNA:m(4)X modification enzyme TRM13 n=18 Tax=Salm... [more]
A0A1S3MP39_SALSA1.050e-753.19tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Salmo... [more]
A0A6F8ZT57_9TELE1.280e-753.19tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
UPI001C08BF9D6.000e-750.00tRNA:m(4)X modification enzyme TRM13 homolog n=1 T... [more]
A0A3P8XCV1_ESOLU1.050e-652.17tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Esox ... [more]
F7EU89_XENTR1.390e-637.68tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Xenop... [more]
C1MVU5_MICPC1.700e-647.73tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]
S8DSX7_9LAMI1.830e-645.10tRNA:m(4)X modification enzyme TRM13 (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10223contigS-firma_F_contig10223:1985..3487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FVJ5
Preferred nameTRMT13
PFAMsTRM13,zf-TRM13_CCCH,zf-U11-48K
Max annot lvl2759|Eukaryota
KEGG koko:K15446
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
Evalue7.33e-31
EggNOG OGsKOG2811@1|root,KOG2811@2759|Eukaryota
EC2.1.1.225
DescriptiontRNA methylation
COG categoryS
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size1041
Cds size1041
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.7042215-CDS-S-firma_F_contig10223:1984..28271622815551.7042215-CDS-S-firma_F_contig10223:1984..2827Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10223 1985..2827 -
1696949409.9757724-CDS-S-firma_F_contig10223:1984..28271696949409.9757724-CDS-S-firma_F_contig10223:1984..2827Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10223 1985..2827 -
1622815551.7167773-CDS-S-firma_F_contig10223:3289..34871622815551.7167773-CDS-S-firma_F_contig10223:3289..3487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10223 3290..3487 -
1696949409.9931796-CDS-S-firma_F_contig10223:3289..34871696949409.9931796-CDS-S-firma_F_contig10223:3289..3487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10223 3290..3487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10223.346.1prot_S-firma_F_contig10223.346.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10223 1985..3487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10223.346.1

>prot_S-firma_F_contig10223.346.1 ID=prot_S-firma_F_contig10223.346.1|Name=mRNA_S-firma_F_contig10223.346.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=347bp
MLTLSDTEKPIPLHERGTGGVDGGGGGGGTAAATAASRVGGVAVATCCHH
VCNWRDYAGREFLSRQGFKARDFDAMRRISAWISLEPDAGTRKNNKYPDE
VHPAAAAAVDSTPMALPPPFSGKTLAAAAPPTITEEDVADGGDVEYAAAD
AAVSTIPERPEKTVGNHQPGGVGAEDHLVRVQHWAATSEGERQRRPGGGT
NEGIPSSLGAAPPPPPSPTTARTLPPSRSPAGAPQASLPPTPAAAAAVTS
PRTDQSAARNAADGGGGDDDDDDDDDHRQSNHAPPPVQVTPADAARTTPP
LAAGVAAAVVAARVPKPLLALGGLTPAEKARAARECKRLIDRGRRAF
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mRNA from alignment at S-firma_F_contig10223:1985..3487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10223.346.1 ID=mRNA_S-firma_F_contig10223.346.1|Name=mRNA_S-firma_F_contig10223.346.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1503bp|location=Sequence derived from alignment at S-firma_F_contig10223:1985..3487- (Sphaerotrichia firma ET2_F female)
ATGCTGACCCTTTCTGACACGGAAAAACCAATACCTTTGCACGAAAGAGG
CACCGGTGGCGTAGACGGTGGCGGGGGCGGCGGTGGGACCGCGGCGGCGA
CGGCGGCGTCTAGGGTGGGAGGCGTGGCAGTTGCCACCTGCTGCCATCAC
GTTTGCAACTGGAGGGATTACGCCGGCAGGGAGTTCCTGTCGCGGCAGGT
AGGCAGGGCGTGATTTTCTCTCCACCTTTTGTCGGTGCGCAAGCACGGCG
TGTGTGCGCTTCGCTCTCTCTCTTTCTGCAGTCGTAACAGGTAGGGGTGG
TGTTCGAGCGCGAAAGTCTTCTTTTCTATTTTGAGGAAAGCGCACCACTC
CGTGTGGACCTTCGTTCCAATCGTCGGGACCAAACCCACCTACCTCTGGT
ATATGTTTCATCCCCGTTTCTAACGTTGTCTTTTTTCTTCACGTCTTGTT
GTGCTCCGTGCGAAAGTCGCGCGCGCGCGTGCGTGGTTGATGCCTGGTTT
GTTTTGTGTGTACTTTCTCGCTTTACCTCTTAGTGATGCATGCGTACGAA
GTACTGCGGTGTGCTTTTGTGCCTTTCTTGCCTTCCGCGTGTCGTTGGCG
TTTCTAAATGCCGCGGTTGGTTGATGCTCGTTCGATGTTCGCTCGTCGTG
GTCTCATCAGGGCTTCAAGGCTCGCGACTTTGACGCCATGCGGCGCATAT
CGGCCTGGATAAGCCTGGAGCCCGACGCAGGTACGCGGAAGAACAACAAG
TACCCCGACGAAGTGCACCCCGCCGCCGCCGCCGCCGTGGATTCCACCCC
TATGGCGTTGCCCCCGCCTTTTTCTGGTAAGACCCTGGCTGCTGCTGCTC
CACCGACGATTACCGAAGAAGACGTTGCTGATGGTGGTGATGTCGAGTAT
GCCGCTGCTGATGCCGCCGTTTCCACGATTCCGGAAAGGCCGGAAAAGAC
CGTCGGCAACCACCAACCGGGAGGCGTCGGGGCCGAGGACCACCTGGTCC
GCGTCCAGCACTGGGCGGCGACATCAGAAGGCGAACGGCAGCGACGGCCG
GGAGGCGGGACAAACGAAGGTATCCCCTCGAGCCTTGGTGCAGCGCCACC
GCCGCCGCCATCCCCTACCACGGCGCGGACCCTCCCACCATCCCGATCGC
CCGCCGGCGCGCCGCAAGCAAGTCTTCCCCCGACCCCGGCGGCGGCTGCA
GCCGTCACGAGCCCTCGGACCGACCAATCGGCAGCGAGAAACGCCGCAGA
CGGCGGCGGCGGCGACGACGACGACGACGACGACGACGATCACCGCCAGA
GTAATCACGCCCCGCCCCCTGTCCAGGTCACCCCTGCAGATGCCGCACGA
ACAACCCCACCGTTAGCGGCAGGGGTGGCGGCTGCGGTGGTGGCGGCCCG
TGTTCCCAAGCCGCTGCTGGCGCTGGGGGGGCTAACGCCGGCGGAGAAGG
CGAGGGCGGCGCGGGAGTGCAAGCGGCTGATCGACAGGGGGAGGAGGGCG
TTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10223:1985..3487-

>mRNA_S-firma_F_contig10223.346.1 ID=mRNA_S-firma_F_contig10223.346.1|Name=mRNA_S-firma_F_contig10223.346.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2082bp|location=Sequence derived from alignment at S-firma_F_contig10223:1985..3487- (Sphaerotrichia firma ET2_F female)
ATGCTGACCCTTTCTGACACGGAAAAACCAATACCTTTGCACGAAAGAGG
CACCGGTGGCGTAGACGGTGGCGGGGGCGGCGGTGGGACCGCGGCGGCGA
CGGCGGCGTCTAGGGTGGGAGGCGTGGCAGTTGCCACCTGCTGCCATCAC
GTTTGCAACTGGAGGGATTACGCCGGCAGGGAGTTCCTGTCGCGGCAGAT
GCTGACCCTTTCTGACACGGAAAAACCAATACCTTTGCACGAAAGAGGCA
CCGGTGGCGTAGACGGTGGCGGGGGCGGCGGTGGGACCGCGGCGGCGACG
GCGGCGTCTAGGGTGGGAGGCGTGGCAGTTGCCACCTGCTGCCATCACGT
TTGCAACTGGAGGGATTACGCCGGCAGGGAGTTCCTGTCGCGGCAGGGCT
TCAAGGCTCGCGACTTTGACGCCATGCGGCGCATATCGGCCTGGATAAGC
CTGGAGCCCGACGCAGGTACGCGGAAGAACAACAAGTACCCCGACGAAGT
GCACCCCGCCGCCGCCGCCGCCGTGGATTCCACCCCTATGGCGTTGCCCC
CGCCTTTTTCTGGTAAGACCCTGGCTGCTGCTGCTCCACCGACGATTACC
GAAGAAGACGTTGCTGATGGTGGTGATGTCGAGTATGCCGCTGCTGATGC
CGCCGTTTCCACGATTCCGGAAAGGCCGGAAAAGACCGTCGGCAACCACC
AACCGGGAGGCGTCGGGGCCGAGGACCACCTGGTCCGCGTCCAGCACTGG
GCGGCGACATCAGAAGGCGAACGGCAGCGACGGCCGGGAGGCGGGACAAA
CGAAGGTATCCCCTCGAGCCTTGGTGCAGCGCCACCGCCGCCGCCATCCC
CTACCACGGCGCGGACCCTCCCACCATCCCGATCGCCCGCCGGCGCGCCG
CAAGCAAGTCTTCCCCCGACCCCGGCGGCGGCTGCAGCCGTCACGAGCCC
TCGGACCGACCAATCGGCAGCGAGAAACGCCGCAGACGGCGGCGGCGGCG
ACGACGACGACGACGACGACGACGATCACCGCCAGAGTAATCACGCCCCG
CCCCCTGTCCAGGTCACCCCTGCAGATGCCGCACGAACAACCCCACCGTT
AGCGGCAGGGGTGGCGGCTGCGGTGGTGGCGGCCCGTGTTCCCAAGCCGC
TGCTGGCGCTGGGGGGGCTAACGCCGGCGGAGAAGGCGAGGGCGGCGCGG
GAGTGCAAGCGGCTGATCGACAGGGGGAGGAGGGCGTTCGGCTTCAAGGC
TCGCGACTTTGACGCCATGCGGCGCATATCGGCCTGGATAAGCCTGGAGC
CCGACGCAGGTACGCGGAAGAACAACAAGTACCCCGACGAAGTGCACCCC
GCCGCCGCCGCCGCCGTGGATTCCACCCCTATGGCGTTGCCCCCGCCTTT
TTCTGGTAAGACCCTGGCTGCTGCTGCTCCACCGACGATTACCGAAGAAG
ACGTTGCTGATGGTGGTGATGTCGAGTATGCCGCTGCTGATGCCGCCGTT
TCCACGATTCCGGAAAGGCCGGAAAAGACCGTCGGCAACCACCAACCGGG
AGGCGTCGGGGCCGAGGACCACCTGGTCCGCGTCCAGCACTGGGCGGCGA
CATCAGAAGGCGAACGGCAGCGACGGCCGGGAGGCGGGACAAACGAAGGT
ATCCCCTCGAGCCTTGGTGCAGCGCCACCGCCGCCGCCATCCCCTACCAC
GGCGCGGACCCTCCCACCATCCCGATCGCCCGCCGGCGCGCCGCAAGCAA
GTCTTCCCCCGACCCCGGCGGCGGCTGCAGCCGTCACGAGCCCTCGGACC
GACCAATCGGCAGCGAGAAACGCCGCAGACGGCGGCGGCGGCGACGACGA
CGACGACGACGACGACGATCACCGCCAGAGTAATCACGCCCCGCCCCCTG
TCCAGGTCACCCCTGCAGATGCCGCACGAACAACCCCACCGTTAGCGGCA
GGGGTGGCGGCTGCGGTGGTGGCGGCCCGTGTTCCCAAGCCGCTGCTGGC
GCTGGGGGGGCTAACGCCGGCGGAGAAGGCGAGGGCGGCGCGGGAGTGCA
AGCGGCTGATCGACAGGGGGAGGAGGGCGTTC
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